Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G002967 Glycine max HOM05D006331 ORTHO05D008043 2.0e-86 322.4 159 100.0
Glyma.05G195400 Glycine max HOM05D006331 ORTHO05D008043 3.3e-78 295.0 154 93.5
Phvul.002G275600 Phaseolus vulgaris HOM05D006331 ORTHO05D008043 1.3e-74 283.1 156 89.1
VMungo0251G2607 Vigna mungo HOM05D006331 ORTHO05D008043 2.3e-71 272.3 155 86.5
Lj4g0002141 Lotus japonicus HOM05D006331 ORTHO05D008043 9.8e-70 266.9 155 83.9
Medtr8g094730 Medicago truncatula HOM05D006331 ORTHO05D008043 3.7e-69 265.0 156 83.3
Ca_17611_v3 Cicer arietinum L. HOM05D006331 ORTHO05D008043 1.4e-68 263.1 153 83.0
Lalb_Chr12g0202951 Lupinus albus HOM05D006331 ORTHO05D008043 5.4e-68 261.2 156 83.3
Psat7g043600 Pisum sativum HOM05D006331 ORTHO05D008043 7.7e-67 257.3 153 81.7
arahy.Tifrunner.gnm1.ann1.GTTL2Q Arachis hypogaea HOM05D006331 ORTHO05D008043 1.0e-66 256.9 174 75.3
Haze_25343 Corylus avellana HOM05D006331 ORTHO05D008043 6.5e-66 254.2 156 79.5
GSVIVG01022367001 Vitis vinifera HOM05D006331 ORTHO05D008043 6.5e-66 254.2 154 79.2
TPR.G37385 Trifolium pratense HOM05D006331 ORTHO05D008043 1.1e-65 253.4 153 81.7
arahy.Tifrunner.gnm1.ann1.9C2QS4 Arachis hypogaea HOM05D006331 ORTHO05D008043 1.9e-65 252.7 182 71.4
Dinv30329 Davidia involucrata HOM05D006331 ORTHO05D008043 1.9e-65 252.7 154 79.9
Cfa002168 Carpinus fangiana HOM05D006331 ORTHO05D008043 2.5e-65 252.3 154 79.9
Cfa002176 Carpinus fangiana HOM05D006331 ORTHO05D008043 2.5e-65 252.3 154 79.9
Gohir.D12G001700 Gossypium hirsutum HOM05D006331 ORTHO05D008043 3.2e-65 251.9 156 77.6
Gohir.A12G001900 Gossypium hirsutum HOM05D006331 ORTHO05D008043 7.2e-65 250.8 156 76.9
Atru.BG.96.p Acer truncatum HOM05D006331 ORTHO05D008043 9.4e-65 250.4 156 79.5
Duzib264G0015 Durio zibethinus HOM05D006331 ORTHO05D008043 9.4e-65 250.4 156 76.3
Thecc.01G141800 Theobroma cacao HOM05D006331 ORTHO05D008043 1.2e-64 250.0 156 77.6
TAR376G0453 Trochodendron aralioides HOM05D006331 ORTHO05D008043 1.6e-64 249.6 157 77.7
COL.COLO4_12111 Corchorus olitorius HOM05D006331 ORTHO05D008043 2.7e-64 248.8 156 76.3
Gorai.008G001100 Gossypium raimondii HOM05D006331 ORTHO05D008043 2.7e-64 248.8 156 76.9
QL10p040044 Quercus lobata HOM05D006331 ORTHO05D008043 8.0e-64 247.3 154 78.6
SalBow7G0499 Salvia bowleyana HOM05D006331 ORTHO05D008043 5.2e-63 244.6 156 73.7
CANSAT01G2335 Cannabis sativa HOM05D006331 ORTHO05D008043 8.8e-63 243.8 155 74.8
CSS0012546 Camellia sinensis var. sinensis HOM05D006331 ORTHO05D008043 1.5e-62 243.0 154 77.9
CSS0035477 Camellia sinensis var. sinensis HOM05D006331 ORTHO05D008043 1.5e-62 243.0 154 77.9
CiPaw.03G115600 Carya illinoinensis HOM05D006331 ORTHO05D008043 1.5e-62 243.0 154 79.2
Sabra07G0082300 Salix brachista HOM05D006331 ORTHO05D008043 4.4e-62 241.5 156 75.0
Migut.L00582 Erythranthe guttata HOM05D006331 ORTHO05D008043 9.8e-62 240.4 156 73.7
Migut.L00271 Erythranthe guttata HOM05D006331 ORTHO05D008043 1.7e-61 239.6 156 73.1
Ciclev10000807m.g Citrus clementina HOM05D006331 ORTHO05D008043 2.2e-61 239.2 156 75.6
Potri.007G098700 Populus trichocarpa HOM05D006331 ORTHO05D008043 2.2e-61 239.2 156 73.7
ECA248G1760 Erigeron canadensis HOM05D006331 ORTHO05D008043 2.8e-61 238.8 154 74.7
Prupe.5G076700 Prunus persica HOM05D006331 ORTHO05D008043 2.8e-61 238.8 156 75.6
HanXRQChr01g0017771 Helianthus annuus HOM05D006331 ORTHO05D008043 4.9e-61 238.0 154 74.0
DCAR_013180 Daucus carota HOM05D006331 ORTHO05D008043 6.3e-61 237.7 156 74.4
Oeu050103.1 Olea europaea HOM05D006331 ORTHO05D008043 6.3e-61 237.7 169 71.0
PGR102G1699 Punica granatum HOM05D006331 ORTHO05D008043 8.3e-61 237.3 156 72.4
PSO170G3731 Papaver somniferum HOM05D006331 ORTHO05D008043 1.4e-60 236.5 154 73.4
TWI75G0452 Tripterygium wilfordii HOM05D006331 ORTHO05D008043 3.1e-60 235.3 154 76.6
PSO528G0231 Papaver somniferum HOM05D006331 ORTHO05D008043 4.1e-60 235.0 154 72.7
Rhsim02G0171900 Rhododendron simsii HOM05D006331 ORTHO05D008043 5.4e-60 234.6 156 74.4
Cc07_g19500 Coffea canephora HOM05D006331 ORTHO05D008043 7.0e-60 234.2 155 74.2
Eucgr.H05078 Eucalyptus grandis HOM05D006331 ORTHO05D008043 2.0e-59 232.6 154 74.0
MSTRG.3598 Avicennia marina HOM05D006331 ORTHO05D008043 2.7e-59 232.3 156 71.8
Oeu042319.1 Olea europaea HOM05D006331 ORTHO05D008043 4.5e-59 231.5 156 70.5
vmacro11024 Vaccinium macrocarpon HOM05D006331 ORTHO05D008043 5.9e-59 231.1 155 72.9
AT5G08740 Arabidopsis thaliana HOM05D006331 ORTHO05D008043 7.7e-59 230.7 156 73.1
Nn5g28340 Nelumbo nucifera HOM05D006331 ORTHO05D008043 7.7e-59 230.7 157 72.6
THA.LOC104819353 Tarenaya hassleriana HOM05D006331 ORTHO05D008043 2.3e-58 229.2 154 73.4
Aqoxy6G00239 Aquilegia oxysepala HOM05D006331 ORTHO05D008043 2.9e-58 228.8 157 73.9
Carub.0006s0771 Capsella rubella HOM05D006331 ORTHO05D008043 2.9e-58 228.8 156 72.4
FAN13G1065 Fragaria x ananassa HOM05D006331 ORTHO05D008043 2.9e-58 228.8 154 72.7
AL6G19490 Arabidopsis lyrata HOM05D006331 ORTHO05D008043 3.8e-58 228.4 154 73.4
Thhalv10013258m.g Eutrema salsugineum HOM05D006331 ORTHO05D008043 3.8e-58 228.4 154 72.7
FvH4_5g00410 Fragaria vesca HOM05D006331 ORTHO05D008043 8.6e-58 227.3 154 72.7
FAN18G4276 Fragaria x ananassa HOM05D006331 ORTHO05D008043 8.6e-58 227.3 154 72.7
Actinidia16518 Actinidia chinensis HOM05D006331 ORTHO05D008043 1.5e-57 226.5 158 72.8
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 1.5e-57 226.5 157 70.1
SGA_v2.0_scaffold143G35715 Striga asiatica HOM05D006331 ORTHO05D008043 1.5e-57 226.5 156 69.2
Sopen03g007600 Solanum pennellii HOM05D006331 ORTHO05D008043 3.3e-57 225.3 154 71.4
PGSC0003DMG400016687 Solanum tuberosum HOM05D006331 ORTHO05D008043 3.3e-57 225.3 154 71.4
FAN04G0432 Fragaria x ananassa HOM05D006331 ORTHO05D008043 5.5e-57 224.6 154 72.7
RcHm_v2.0_Chr7g0202111 Rosa chinensis HOM05D006331 ORTHO05D008043 5.5e-57 224.6 154 72.1
MD04G1081700 Malus domestica HOM05D006331 ORTHO05D008043 7.2e-57 224.2 154 74.7
Solyc03g043750.3 Solanum lycopersicum HOM05D006331 ORTHO05D008043 7.2e-57 224.2 153 71.2
Atru.chr4.1109 Acer truncatum HOM05D006331 ORTHO05D008043 9.5e-57 223.8 141 78.7
CARHR204260 Cardamine hirsuta HOM05D006331 ORTHO05D008043 9.5e-57 223.8 154 71.4
Nitab4.5_0002100g0110 Nicotiana tabacum HOM05D006331 ORTHO05D008043 9.5e-57 223.8 156 69.2
Sp6g34130 Schrenkiella parvula HOM05D006331 ORTHO05D008043 1.2e-56 223.4 154 70.8
MELO3C008946.2 Cucumis melo HOM05D006331 ORTHO05D008043 2.1e-56 222.6 154 69.5
Nitab4.5_0004338g0140 Nicotiana tabacum HOM05D006331 ORTHO05D008043 2.8e-56 222.2 154 70.1
Ah.06g188590 Amaranthus hybridus HOM05D006331 ORTHO05D008043 3.6e-56 221.9 157 69.4
EL10Ac4g09668 Beta vulgaris HOM05D006331 ORTHO05D008043 3.6e-56 221.9 154 70.1
CsaV3_4G030790 Cucumis sativus L. HOM05D006331 ORTHO05D008043 3.6e-56 221.9 154 69.5
Hund07213 Selenicereus undatus HOM05D006331 ORTHO05D008043 4.7e-56 221.5 154 70.8
C09p68240 Brassica napus HOM05D006331 ORTHO05D008043 6.1e-56 221.1 154 70.8
BolC9t59572H Brassica oleracea HOM05D006331 ORTHO05D008043 6.1e-56 221.1 154 70.8
BraA10t44853Z Brassica rapa HOM05D006331 ORTHO05D008043 6.1e-56 221.1 154 70.8
A10p28040 Brassica napus HOM05D006331 ORTHO05D008043 3.0e-55 218.8 154 70.1
ATR0665G153 Amborella trichopoda HOM05D006331 ORTHO05D008043 4.0e-55 218.4 156 69.2
Aa31LG3G17820 Aethionema arabicum HOM05D006331 ORTHO05D008043 5.2e-55 218.0 155 71.6
CAN.G11.28 Capsicum annuum HOM05D006331 ORTHO05D008043 6.8e-55 217.6 156 69.2
AUR62000551 Chenopodium quinoa HOM05D006331 ORTHO05D008043 1.2e-54 216.9 153 69.9
AUR62006903 Chenopodium quinoa HOM05D006331 ORTHO05D008043 3.7e-53 211.8 153 68.6
Sed0028082 Sechium edule HOM05D006331 ORTHO05D008043 3.7e-53 211.8 154 68.8
Os06g0214900 Oryza sativa ssp. japonica HOM05D006331 ORTHO05D008043 8.3e-53 210.7 157 66.9
Lsat_1_v5_gn_1_81581 Lactuca sativa HOM05D006331 ORTHO05D008043 9.2e-52 207.2 155 69.7
Sc16g0009670 Simmondsia chinensis HOM05D006331 ORTHO05D008043 1.7e-50 203.0 141 70.2
HPP92_013148 Vanilla planifolia HOM05D006331 ORTHO05D008043 1.7e-50 203.0 160 65.6
Cpa.g.sc37.37 Carica papaya HOM05D006331 ORTHO05D008043 8.6e-50 200.7 138 70.3
BcaB08g37229 Brassica carinata HOM05D006331 ORTHO05D008043 7.3e-49 197.6 159 65.4
Mapoly0183s0011 Marchantia polymorpha HOM05D006331 ORTHO05D008043 1.2e-48 196.8 160 63.8
SMO172G0167 Selaginella moellendorffii HOM05D006331 ORTHO05D008043 4.7e-48 194.9 158 63.3
Nn5g28377 Nelumbo nucifera HOM05D006331 ORTHO05D008043 4.1e-44 181.8 115 75.7
ClCG04G001810 Citrullus lanatus HOM05D006331 ORTHO05D008043 2.3e-42 176.0 154 59.7
Pp3c24_18540 Physcomitrium patens HOM05D006331 ORTHO05D008043 1.5e-41 173.3 161 55.9
SEGI_30894 Sequoiadendron giganteum HOM05D006331 ORTHO05D008043 5.1e-34 148.3 114 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1808 Anthoceros agrestis HOM05D006331 ORTHO05D008043 4.9e-29 131.7 157 48.4
PRCOL_00002259 Prasinoderma coloniale HOM05D006331 ORTHO05D008043 6.4e-29 131.3 159 44.7
MCO15G677 Micromonas commoda HOM05D006331 ORTHO05D008043 1.2e-27 127.1 162 45.1
Lj4C830T4 Lonicera japonica HOM05D006331 ORTHO05D008043 4.6e-27 125.2 70 80.0
Manes.10G075600 Manihot esculenta HOM05D006331 ORTHO05D008043 4.3e-25 118.6 156 47.4
unitig_899.g14454 Utricularia gibba HOM05D006331 ORTHO05D008043 1.1e-23 114.0 156 46.8
Cre16.g671000 Chlamydomonas reinhardtii HOM05D006331 ORTHO05D008043 5.2e-23 111.7 157 41.4
Lj4A830T32 Lonicera japonica HOM05D006331 ORTHO05D008043 1.2e-22 110.5 71 78.9
Hma1.2p1_2302F.1_g319320 Hydrangea macrophylla HOM05D006331 ORTHO05D008043 2.6e-22 109.4 79 72.2
MBI06_g01071_MAGBIO Magnolia biondii HOM05D006331 ORTHO05D008043 1.3e-21 107.1 157 45.2
SalBow8G4137 Salvia bowleyana HOM05D006331 ORTHO05D008043 6.0e-19 98.2 64 71.9
Peaxi162Scf00699g00515 Petunia axillaris HOM05D006331 ORTHO05D008043 1.0e-18 97.4 156 39.7
Zm00001eb373110 Zea mays HOM05D006331 ORTHO05D008043 1.9e-17 93.2 72 65.3
DCAR_006357 Daucus carota HOM05D006331 ORTHO05D008043 2.5e-17 92.8 64 65.6
Psat7g153880 Pisum sativum HOM05D000873 ORTHO05D001654 6.9e-07 58.2 163 28.8
Sopen07g028540 Solanum pennellii HOM05D000873 ORTHO05D001654 1.2e-06 57.4 167 25.7
MBI02_g06004_MAGBIO Magnolia biondii HOM05D000873 ORTHO05D001654 1.5e-06 57.0 159 28.9
Solyc07g054640.1 Solanum lycopersicum HOM05D000873 ORTHO05D001654 2.0e-06 56.6 167 26.3
ECA248G3315 Erigeron canadensis HOM05D000873 ORTHO05D001654 2.6e-06 56.2 162 24.7
Migut.H01516 Erythranthe guttata HOM05D000873 ORTHO05D001654 2.6e-06 56.2 165 26.1
CAN.G508.25 Capsicum annuum HOM05D000873 ORTHO05D001654 4.5e-06 55.5 167 25.7
Peaxi162Scf00007g02725 Petunia axillaris HOM05D000873 ORTHO05D001654 4.5e-06 55.5 167 25.7
Mapoly0038s0104 Marchantia polymorpha HOM05D000873 ORTHO05D001654 5.8e-06 55.1 165 27.3
Oeu025482.2 Olea europaea HOM05D000873 ORTHO05D001654 5.8e-06 55.1 167 25.7
Lsat_1_v5_gn_3_39940 Lactuca sativa HOM05D000873 ORTHO05D001654 7.6e-06 54.7 170 26.5
Sopen10g004430 Solanum pennellii HOM05D000873 ORTHO05D001654 7.6e-06 54.7 167 24.0
Cc04_g15570 Coffea canephora HOM05D006331 ORTHO05D008043 9.9e-06 54.3 47 57.4
DCAR_028133 Daucus carota HOM05D000873 ORTHO05D001654 9.9e-06 54.3 167 26.3
SGA_v2.0_scaffold159G37627 Striga asiatica HOM05D000873 ORTHO05D001654 9.9e-06 54.3 168 25.0


User provided reference genes

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