Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 0.0e+00 1192.6 606 100.0
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 0.0e+00 1154.8 606 97.2
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 0.0e+00 1145.2 611 95.6
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 0.0e+00 1140.6 611 95.6
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 0.0e+00 1091.6 611 90.8
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.2e-304 1049.3 607 87.6
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 9.8e-296 1019.6 601 86.7
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 5.8e-288 993.8 602 84.4
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.7e-279 965.7 609 81.3
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 2.2e-279 965.3 604 82.3
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 4.1e-278 961.1 608 81.1
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 7.8e-277 956.8 605 80.7
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.1e-274 948.7 600 80.3
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.1e-274 948.7 594 82.2
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.6e-272 941.8 609 78.7
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 3.4e-272 941.4 603 79.8
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 7.5e-272 940.3 586 81.7
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 9.9e-272 939.9 605 80.0
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.1e-270 936.4 598 80.3
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.9e-270 935.6 597 79.7
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 5.4e-270 934.1 608 79.1
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 9.2e-270 933.3 594 80.6
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.1e-269 932.2 596 79.5
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.9e-268 927.9 610 77.5
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 8.6e-268 926.8 610 77.5
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.1e-267 926.4 624 77.2
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.3e-267 924.5 606 77.7
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 7.3e-267 923.7 602 78.6
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 6.2e-266 920.6 611 78.1
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 8.1e-266 920.2 606 77.4
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.4e-265 919.5 605 78.2
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 6.8e-265 917.1 603 78.6
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 8.9e-265 916.8 601 77.7
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 2.0e-264 915.6 627 78.1
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.4e-264 914.8 601 78.7
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.7e-263 912.5 605 78.3
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.7e-263 912.5 583 80.4
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 2.2e-263 912.1 587 78.9
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.9e-263 911.8 590 79.2
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 4.9e-263 911.0 558 82.4
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 4.9e-263 911.0 558 82.4
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 4.9e-263 911.0 598 78.4
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.1e-262 909.8 601 78.4
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.9e-262 909.1 601 78.2
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 7.1e-262 907.1 609 76.2
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.7e-261 905.2 600 77.8
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 3.5e-261 904.8 584 79.3
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.9e-260 901.4 610 77.5
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 5.1e-260 901.0 603 77.3
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.1e-259 899.8 587 79.0
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 2.5e-259 898.7 578 78.5
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.3e-259 898.3 605 76.0
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.6e-258 896.0 609 76.7
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.8e-258 895.2 610 76.1
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 4.8e-258 894.4 610 76.1
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 8.1e-258 893.6 612 76.1
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 8.1e-258 893.6 610 75.6
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 8.1e-258 893.6 604 77.6
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 1.8e-257 892.5 604 75.5
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.4e-257 892.1 610 75.9
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.0e-257 891.3 608 75.3
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 4.0e-257 891.3 600 77.3
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 3.4e-256 888.3 610 75.7
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 3.4e-256 888.3 610 75.6
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 9.9e-256 886.7 592 78.0
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.4e-255 884.0 593 77.2
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 2.1e-253 879.0 531 85.9
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 3.5e-253 878.2 595 75.8
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 4.6e-253 877.9 608 75.2
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 4.6e-253 877.9 599 76.6
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 5.1e-252 874.4 618 74.8
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 6.6e-252 874.0 609 75.5
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.5e-251 872.8 618 74.8
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.1e-250 869.0 610 74.1
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 2.1e-250 869.0 598 75.9
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.6e-250 868.2 604 75.8
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 3.6e-250 868.2 598 74.4
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.8e-249 865.9 604 75.8
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.5e-248 862.8 597 74.5
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.1e-245 852.4 527 81.2
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 3.0e-244 848.6 522 81.6
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 3.3e-243 845.1 602 73.1
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.8e-242 841.3 598 72.2
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 5.8e-240 834.3 595 74.1
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.0e-239 833.6 612 71.9
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.7e-239 832.8 613 71.9
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.2e-239 832.4 592 73.8
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.8e-239 831.6 535 80.6
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.1e-238 830.1 578 73.9
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 2.3e-236 822.4 670 65.8
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.1e-235 820.1 603 71.6
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 4.3e-235 818.1 577 72.6
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 4.8e-234 814.7 592 73.3
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 8.2e-234 813.9 603 71.6
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 2.4e-233 812.4 604 71.5
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 5.3e-233 811.2 599 72.3
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 6.9e-233 810.8 595 71.6
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.4e-232 808.5 615 69.3
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.5e-230 802.4 597 71.2
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 3.2e-230 802.0 596 70.8
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 9.3e-230 800.4 580 72.6
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.6e-229 799.7 574 73.9
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 4.6e-229 798.1 574 73.3
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.3e-228 796.6 593 70.7
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 2.3e-228 795.8 574 72.6
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 3.9e-228 795.0 580 72.1
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 3.9e-228 795.0 604 71.2
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 5.1e-228 794.7 593 70.5
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 1.3e-226 790.0 608 67.6
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 2.8e-226 788.9 602 70.4
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 3.7e-226 788.5 593 69.8
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 3.7e-226 788.5 593 69.8
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.1e-225 785.0 567 71.1
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.6e-224 782.3 605 68.6
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 3.4e-224 781.9 577 71.9
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 3.8e-223 778.5 575 71.8
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 3.8e-223 778.5 575 71.8
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 5.0e-223 778.1 595 70.4
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 7.4e-219 764.2 599 68.3
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.5e-216 755.0 591 67.7
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.4e-214 750.0 599 69.1
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.7e-213 745.7 597 65.2
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 3.6e-213 745.3 526 72.6
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 7.9e-213 744.2 554 72.0
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.0e-212 743.8 606 65.5
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 9.7e-211 737.3 590 66.4
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.1e-209 731.9 550 67.5
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.2e-205 720.3 575 66.4
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 4.7e-205 718.4 606 62.2
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.7e-203 711.4 519 70.7
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 3.1e-201 705.7 420 83.3
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 5.5e-198 694.9 596 62.6
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 6.1e-197 691.4 599 64.4
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.1e-197 691.4 555 66.1
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.0e-197 691.0 527 67.9
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 8.0e-197 691.0 574 64.8
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-196 690.6 539 66.8
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 7.5e-195 684.5 415 82.2
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.6e-192 676.8 414 81.2
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 1.0e-191 674.1 412 82.5
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-186 657.1 527 65.1
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 4.1e-185 652.1 495 67.1
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 2.7e-184 649.4 513 66.7
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.3e-183 647.1 528 63.3
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 8.9e-172 607.8 460 72.0
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 5.2e-164 582.0 575 53.6
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 6.2e-157 558.5 382 74.6
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 5.6e-150 535.4 524 58.0
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.8e-149 533.1 476 58.0
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.1e-140 503.1 336 77.1
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.9e-134 483.8 340 75.0
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 9.9e-131 471.5 458 56.6
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 5.7e-102 375.9 325 62.8
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.4e-70 270.4 157 86.0
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 3.3e-65 253.8 145 87.6
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 7.3e-49 199.5 166 61.4
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 6.2e-48 196.4 168 59.5
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 3.4e-46 190.7 165 59.4
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.2e-45 188.0 165 58.8
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.4e-36 157.9 98 80.6
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 2.1e-35 154.8 123 63.4
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 4.8e-24 117.1 94 64.9
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.4e-23 114.8 94 63.8
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 2.9e-21 107.8 115 52.2
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.9e-21 107.8 318 27.7
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.3e-20 102.8 273 28.9
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 2.3e-18 98.2 60 80.0
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-16 92.4 187 31.0
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-15 89.0 181 35.4
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 2.4e-15 88.2 123 38.2
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 2.4e-15 88.2 86 54.7
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.4e-12 79.0 70 68.6
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 3.2e-12 77.8 78 61.5
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.6e-08 65.5 74 55.4
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.8e-08 64.7 55 54.5
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.0e-06 58.5 61 52.5


User provided reference genes

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