Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 2.4e-69 265.4 134 100.0
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 2.4e-61 238.8 136 90.4
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 4.7e-41 171.4 137 71.5
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 4.9e-38 161.4 137 67.9
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 6.6e-27 124.4 145 58.6
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 6.6e-27 124.4 142 58.5
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 8.6e-27 124.0 136 59.6
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 1.1e-24 117.1 146 56.8
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 1.4e-24 116.7 144 52.8
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 8.9e-24 114.0 145 55.2
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 2.0e-23 112.8 144 52.1
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 4.4e-23 111.7 140 52.9
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 9.8e-23 110.5 148 54.1
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 9.8e-23 110.5 151 52.3
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 2.4e-21 105.9 143 51.0
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 3.5e-20 102.1 156 49.4
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 1.1e-18 97.1 146 49.3
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 5.2e-16 88.2 133 48.1
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 6.8e-16 87.8 133 48.1
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.6e-15 85.9 136 48.5
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 2.6e-15 85.9 135 45.9
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.6e-15 85.9 141 43.3
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.7e-14 83.2 142 38.7
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.4e-13 80.1 143 45.5
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.4e-13 79.3 143 42.7
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 2.7e-12 75.9 157 42.7
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 6.0e-12 74.7 157 42.0
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 6.0e-12 74.7 143 40.6
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 1.7e-11 73.2 142 41.5
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 1.7e-11 73.2 155 38.7
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 2.3e-11 72.8 135 41.5
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 3.0e-11 72.4 143 42.7
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 3.0e-11 72.4 145 44.1
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 3.9e-11 72.0 162 41.4
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.1e-10 70.5 135 40.7
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 1.9e-10 69.7 135 41.5
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.5e-10 69.3 136 43.4
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 2.5e-10 69.3 138 40.6
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 4.3e-10 68.6 137 43.1
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 5.6e-10 68.2 140 42.1
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 5.6e-10 68.2 141 41.8
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 9.6e-10 67.4 137 39.4
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 1.2e-09 67.0 140 41.4
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.6e-09 65.5 137 43.1
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 4.7e-09 65.1 136 41.2
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 4.7e-09 65.1 136 40.4
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 6.2e-09 64.7 160 36.9
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 8.1e-09 64.3 135 38.5
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 1.8e-08 63.2 131 38.2
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 2.4e-08 62.8 124 41.1
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 5.2e-08 61.6 134 41.0
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 6.8e-08 61.2 134 40.3
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 6.8e-08 61.2 137 39.4
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.8e-08 61.2 123 39.0
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 8.9e-08 60.8 151 37.1
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.2e-07 60.5 126 42.9
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 2.0e-07 59.7 132 38.6
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 2.0e-07 59.7 138 37.0
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 2.0e-07 59.7 139 37.4
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.6e-07 59.3 123 38.2
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 2.6e-07 59.3 137 36.5
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 2.6e-07 59.3 139 36.7
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 3.4e-07 58.9 122 37.7
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 3.4e-07 58.9 122 37.7
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 3.4e-07 58.9 137 39.4
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 3.4e-07 58.9 134 38.8
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 4.4e-07 58.5 137 39.4
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 4.4e-07 58.5 145 35.9
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 4.4e-07 58.5 129 38.8
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 5.8e-07 58.2 161 36.0
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 5.8e-07 58.2 137 36.5
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 9.9e-07 57.4 135 38.5
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.3e-06 57.0 122 39.3
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.3e-06 57.0 135 37.8
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.3e-06 57.0 135 37.8
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 1.3e-06 57.0 155 37.4
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 1.3e-06 57.0 135 37.8
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.7e-06 56.6 96 44.8
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 1.7e-06 56.6 131 36.6
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 1.7e-06 56.6 159 36.5
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.2e-06 56.2 162 34.0
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.9e-06 55.8 123 35.0
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.9e-06 55.8 123 35.0
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 2.9e-06 55.8 142 35.2
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 3.8e-06 55.5 138 37.7
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.9e-06 55.1 134 35.8
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.4e-06 54.7 134 36.6
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 6.4e-06 54.7 134 36.6
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 6.4e-06 54.7 154 35.1
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 6.4e-06 54.7 125 40.8
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 6.4e-06 54.7 128 40.6
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 8.4e-06 54.3 140 35.7
CSS0019001 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 8.4e-06 54.3 139 35.3
CDE04G1256 Ceratophyllum demersum HOM05D000020 ORTHO05D000156 8.4e-06 54.3 62 50.0
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 8.4e-06 54.3 138 37.0


User provided reference genes

Program Settings