Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 5.7e-104 380.9 195 100.0
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 7.7e-85 317.4 197 84.8
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.9e-84 315.5 197 84.8
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 1.2e-82 310.1 197 82.7
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 4.7e-82 308.1 197 82.7
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.4e-81 306.6 192 82.3
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 4.0e-81 305.1 192 82.3
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 2.8e-79 298.9 197 80.7
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 2.5e-75 285.8 184 82.6
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.2e-74 283.5 178 84.8
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.6e-74 283.1 180 82.2
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.6e-74 283.1 184 80.4
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 2.8e-74 282.3 180 82.2
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 3.6e-74 282.0 180 82.8
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.8e-73 279.6 184 79.3
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 4.0e-73 278.5 175 85.1
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 8.8e-73 277.3 180 81.1
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.7e-71 273.1 184 77.7
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 6.3e-71 271.2 180 78.3
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 5.4e-70 268.1 184 75.0
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 9.2e-70 267.3 180 76.7
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 5.9e-69 264.6 186 72.6
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 5.0e-68 261.5 183 73.8
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.5e-67 260.0 180 73.9
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 1.5e-67 260.0 180 73.9
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.3e-67 258.8 184 71.7
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 4.3e-67 258.5 180 73.9
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 5.6e-67 258.1 180 71.1
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 7.3e-67 257.7 184 71.7
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 7.3e-67 257.7 180 72.8
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 9.5e-67 257.3 181 72.4
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 9.5e-67 257.3 184 71.7
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 1.2e-66 256.9 184 72.3
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.6e-66 256.5 184 70.7
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.6e-66 256.5 184 71.2
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 2.1e-66 256.1 184 70.7
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.8e-66 255.8 194 68.0
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 2.8e-66 255.8 180 73.9
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 6.1e-66 254.6 180 73.3
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.0e-66 254.2 184 70.7
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 8.0e-66 254.2 180 72.2
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.4e-65 253.4 180 72.2
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 2.3e-65 252.7 188 68.6
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 2.3e-65 252.7 180 71.7
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.0e-65 252.3 183 71.0
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 3.0e-65 252.3 180 72.2
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 4.0e-65 251.9 186 69.4
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 4.0e-65 251.9 180 71.7
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 5.2e-65 251.5 175 74.3
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 6.8e-65 251.1 184 71.2
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 6.8e-65 251.1 177 73.4
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 8.9e-65 250.8 180 71.1
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 8.9e-65 250.8 183 69.9
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 8.9e-65 250.8 180 72.2
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 8.9e-65 250.8 177 72.9
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.2e-64 250.4 183 69.9
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.2e-64 250.4 181 71.3
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.2e-64 250.4 181 71.3
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.5e-64 250.0 181 71.3
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.0e-64 249.6 184 69.0
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 3.4e-64 248.8 184 67.9
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 3.4e-64 248.8 173 75.1
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 3.4e-64 248.8 180 71.7
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 3.4e-64 248.8 184 67.4
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 9.8e-64 247.3 184 68.5
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.3e-63 246.9 179 71.5
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.3e-63 246.9 179 71.5
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.3e-63 246.9 179 71.5
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.3e-63 246.9 179 71.5
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 1.7e-63 246.5 185 66.5
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.9e-63 245.7 179 70.4
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 8.3e-63 244.2 186 68.3
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 1.1e-62 243.8 181 70.2
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.1e-62 243.8 184 67.4
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.4e-62 243.4 180 69.4
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.4e-62 243.4 180 69.4
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 1.8e-62 243.0 180 69.4
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.8e-62 243.0 183 68.3
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 3.2e-62 242.3 181 70.2
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 4.1e-62 241.9 184 66.3
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 7.0e-62 241.1 179 69.8
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 9.2e-62 240.7 175 70.9
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 2.0e-61 239.6 176 70.5
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 2.7e-61 239.2 177 67.8
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 3.5e-61 238.8 179 68.7
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 3.5e-61 238.8 179 68.7
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 4.6e-61 238.4 173 69.9
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 5.9e-61 238.0 173 70.5
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 7.8e-61 237.7 177 69.5
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.0e-60 237.3 174 72.4
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.3e-60 236.9 184 66.8
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 3.9e-60 235.3 179 68.2
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 3.9e-60 235.3 179 67.6
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 3.9e-60 235.3 179 67.6
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 6.6e-60 234.6 179 67.6
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 8.6e-60 234.2 180 64.4
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.1e-59 233.8 179 66.5
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.1e-59 233.8 179 67.6
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.1e-59 233.8 179 66.5
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.1e-59 233.8 179 66.5
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.1e-59 233.8 179 68.2
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 1.5e-59 233.4 173 69.4
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.5e-59 233.4 179 67.6
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 1.5e-59 233.4 173 68.8
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.9e-59 233.0 180 66.1
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 2.5e-59 232.6 179 66.5
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 3.3e-59 232.3 179 65.9
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 3.3e-59 232.3 179 65.9
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 3.3e-59 232.3 179 67.0
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 5.6e-59 231.5 180 64.4
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.6e-58 229.9 180 67.2
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 2.1e-58 229.6 175 66.9
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 3.6e-58 228.8 176 67.0
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.6e-58 228.8 179 63.7
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 5.2e-57 224.9 184 64.1
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 5.2e-57 224.9 164 70.1
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.6e-56 222.6 153 75.8
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 4.4e-56 221.9 176 65.3
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.3e-55 220.3 177 65.0
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.9e-54 216.5 167 67.1
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 3.2e-54 215.7 180 64.4
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.5e-51 206.1 143 71.3
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 4.3e-51 205.3 157 66.9
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 6.2e-50 201.4 180 58.9
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 6.8e-49 198.0 180 58.3
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 9.9e-48 194.1 180 55.6
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 4.6e-45 185.3 175 56.0
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 4.3e-43 178.7 178 50.0
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 2.8e-42 176.0 180 58.3
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 9.9e-40 167.5 194 44.8
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.2e-39 166.4 178 46.6
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 4.1e-38 162.2 173 48.6
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 2.1e-34 149.8 180 43.9
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 2.7e-29 132.9 84 73.8
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 5.8e-24 115.2 151 46.4
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 2.4e-22 109.8 70 81.4
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 6.2e-10 68.6 46 73.9


User provided reference genes

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