Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 3.2e-248 861.3 433 100.0
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 2.4e-203 712.2 404 88.6
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 2.2e-196 689.1 442 80.8
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 7.7e-186 654.1 432 79.9
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.6e-167 593.2 457 68.7
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 2.4e-163 579.3 455 65.7
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 6.6e-161 571.2 457 67.6
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.7e-156 556.6 467 65.1
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.7e-156 556.6 422 67.1
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 2.3e-153 546.2 440 65.0
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 6.6e-153 544.7 423 68.1
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 4.3e-152 542.0 435 67.4
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 1.4e-150 537.0 438 62.6
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.8e-150 536.6 449 61.9
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 2.0e-149 533.1 410 66.1
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.7e-148 528.9 432 64.1
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 4.9e-148 528.5 434 62.9
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 6.4e-148 528.1 412 64.8
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 1.9e-147 526.6 442 61.5
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 7.1e-147 524.6 416 65.9
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 7.1e-147 524.6 419 64.2
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 2.3e-145 519.6 411 65.7
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 8.6e-145 517.7 424 65.6
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.5e-144 516.9 494 58.5
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 5.6e-144 515.0 454 59.3
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 5.6e-144 515.0 422 62.8
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 3.6e-143 512.3 414 62.1
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 3.6e-143 512.3 413 63.0
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 3.6e-143 512.3 413 63.0
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.8e-142 510.0 420 62.4
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 1.8e-142 510.0 471 59.7
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 1.2e-141 507.3 498 57.4
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 3.4e-141 505.8 414 64.3
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 1.3e-140 503.8 473 57.3
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 2.9e-140 502.7 426 63.1
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 1.6e-138 496.9 424 60.4
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.6e-138 496.9 414 61.4
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 9.6e-136 487.6 404 61.9
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.2e-133 480.7 426 59.2
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 1.2e-133 480.7 307 76.2
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 2.6e-133 479.6 427 59.3
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 1.7e-132 476.9 438 58.4
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.4e-131 473.8 425 60.9
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 2.4e-131 473.0 439 59.0
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 1.2e-130 470.7 316 73.1
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 2.1e-130 469.9 281 80.1
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 3.5e-130 469.2 414 58.0
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 3.5e-130 469.2 437 58.6
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 3.5e-130 469.2 494 53.4
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 4.6e-130 468.8 438 57.8
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 1.3e-129 467.2 426 60.1
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.7e-129 466.8 465 55.3
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 2.3e-129 466.5 453 55.8
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 8.7e-129 464.5 431 57.3
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.1e-128 464.2 476 53.6
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 1.5e-128 463.8 417 59.2
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.9e-128 463.4 431 58.0
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 1.9e-128 463.4 453 55.2
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.9e-128 463.4 452 55.3
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 3.3e-128 462.6 421 58.9
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 4.3e-128 462.2 417 59.0
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 4.3e-128 462.2 493 54.0
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 4.3e-128 462.2 452 54.9
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 5.6e-128 461.8 493 51.3
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 7.3e-128 461.5 424 57.5
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 1.3e-127 460.7 431 57.3
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 1.6e-127 460.3 482 51.9
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 6.2e-127 458.4 417 57.3
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 8.1e-127 458.0 517 48.9
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 1.1e-126 457.6 411 59.1
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.1e-126 457.6 493 53.3
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 1.1e-126 457.6 421 58.4
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.4e-126 457.2 416 57.7
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.8e-126 456.8 448 55.1
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 3.1e-126 456.1 417 57.3
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.2e-125 454.1 425 57.9
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 6.4e-124 448.4 537 48.4
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 1.1e-123 447.6 499 50.5
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 4.6e-122 442.2 517 48.4
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 3.9e-121 439.1 415 57.1
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 5.1e-121 438.7 530 48.3
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 2.5e-120 436.4 433 55.0
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 1.3e-119 434.1 416 55.8
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 1.3e-119 434.1 436 56.7
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.4e-118 430.6 525 47.2
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 3.4e-117 426.0 453 52.8
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.6e-111 407.1 349 58.2
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.8e-110 403.7 464 45.9
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 6.9e-110 401.7 446 46.9
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.9e-107 393.7 274 62.4
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 9.3e-107 391.3 266 69.2
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 2.1e-106 390.2 282 63.8
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.5e-104 384.0 267 64.8
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 3.3e-104 382.9 421 50.1
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 2.2e-103 380.2 517 45.3
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 1.4e-102 377.5 297 60.9
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 1.8e-102 377.1 273 64.1
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 5.3e-102 375.6 276 60.1
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 6.9e-102 375.2 541 43.6
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 9.0e-102 374.8 279 63.8
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 7.7e-101 371.7 268 65.3
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 1.6e-98 364.0 269 61.3
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.3e-95 354.4 284 57.0
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.4e-94 350.1 268 63.8
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 9.1e-94 348.2 267 61.0
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 5.0e-92 342.4 264 58.0
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 2.5e-91 340.1 237 65.4
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 3.7e-87 326.2 250 59.2
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.0e-84 318.2 307 52.1
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 5.5e-83 312.4 195 71.3
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 6.1e-82 308.9 267 56.9
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.8e-81 307.4 294 53.4
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.7e-74 283.5 272 51.8
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.1e-74 282.3 285 50.2
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.2e-72 278.1 177 71.2
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 2.7e-69 266.9 191 62.3
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.3e-60 237.3 272 46.7
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 4.2e-59 233.0 233 49.4
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 1.5e-56 224.6 277 43.3
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.4e-56 223.0 272 44.9
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 1.8e-54 217.6 137 69.3
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 5.0e-52 209.5 227 55.1
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 1.5e-51 208.0 137 73.0
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 1.0e-49 201.8 178 55.6
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 1.2e-48 198.4 206 55.3
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.7e-47 194.5 253 41.9
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 3.2e-46 190.3 220 53.6
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 7.8e-45 185.7 137 62.8
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.1e-43 181.8 288 38.2
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 9.5e-43 178.7 101 76.2
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 4.1e-38 163.3 292 36.3
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.3e-36 158.3 294 34.0
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.1e-33 148.7 166 46.4
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 6.6e-28 129.4 98 59.2
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 3.3e-27 127.1 288 30.9
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.1e-26 124.4 122 48.4
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 4.7e-26 123.2 272 36.4
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 2.6e-24 117.5 351 27.4
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 3.4e-24 117.1 78 70.5
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 1.9e-22 111.3 184 44.0
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 4.4e-16 90.1 59 62.7
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 5.8e-16 89.7 121 53.7
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 6.4e-15 86.3 127 44.1
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 1.6e-13 81.6 83 48.2
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 4.3e-11 73.6 62 51.6
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 6.2e-10 69.7 63 52.4
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.9e-07 60.1 36 69.4
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 7.1e-06 56.2 102 30.4


User provided reference genes

Program Settings