Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 1.5e-30 135.6 69 100.0
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 2.0e-27 125.2 69 91.3
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 5.4e-25 117.1 69 85.5
Ca_21080_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 3.6e-21 104.4 67 76.1
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 8.1e-21 103.2 68 73.5
TPR.G37004 Trifolium pratense HOM05D007037 ORTHO05D006691 1.4e-20 102.4 65 75.4
Psat4g006560 Pisum sativum HOM05D007037 ORTHO05D006691 2.2e-18 95.1 68 72.1
Medtr4g132230 Medicago truncatula HOM05D007037 ORTHO05D006691 6.0e-16 87.0 68 66.2
Lalb_Chr07g0177181 Lupinus albus HOM05D007037 ORTHO05D006691 1.1e-14 82.8 68 66.2
Lalb_Chr13g0304241 Lupinus albus HOM05D007037 ORTHO05D006691 2.5e-14 81.6 68 66.2
Glyma.09G004000 Glycine max HOM05D007037 ORTHO05D006691 1.3e-13 79.3 70 64.3
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 3.1e-12 74.7 79 53.2
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 9.0e-12 73.2 69 55.1
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 9.0e-12 73.2 80 50.0
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 1.2e-11 72.8 80 48.8
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 2.0e-11 72.0 79 51.9
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 4.5e-11 70.9 80 48.8
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 1.3e-10 69.3 78 47.4
Eucgr.E04050 Eucalyptus grandis HOM05D007037 ORTHO05D006691 3.8e-10 67.8 80 48.8
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 3.8e-10 67.8 75 48.0
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 4.9e-10 67.4 80 46.2
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 6.4e-10 67.0 78 47.4
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 8.4e-10 66.6 81 48.1
Medtr2g023440 Medicago truncatula HOM05D007037 ORTHO05D006691 8.4e-10 66.6 80 51.2
Lj6g0006723 Lotus japonicus HOM05D007037 ORTHO05D006691 1.4e-09 65.9 76 52.6
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 1.9e-09 65.5 80 47.5
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 2.4e-09 65.1 76 50.0
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 4.2e-09 64.3 76 47.4
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 4.2e-09 64.3 76 47.4
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 4.2e-09 64.3 80 45.0
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 4.2e-09 64.3 80 43.8
TPR.G13436 Trifolium pratense HOM05D007037 ORTHO05D006691 1.2e-08 62.8 80 48.8
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 1.6e-08 62.4 79 44.3
SalBow8G3366 Salvia bowleyana HOM05D007037 ORTHO05D006691 1.6e-08 62.4 50 58.0
BcaC05g25043 Brassica carinata HOM05D001191 ORTHO05D000979 2.1e-08 62.0 66 53.0
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 2.1e-08 62.0 79 41.8
Thhalv10009555m.g Eutrema salsugineum HOM05D001191 ORTHO05D000979 3.5e-08 61.2 69 47.8
CsaV3_6G049020 Cucumis sativus L. HOM05D007037 ORTHO05D006691 4.6e-08 60.8 77 49.4
Sp1g10350 Schrenkiella parvula HOM05D001191 ORTHO05D000979 4.6e-08 60.8 66 51.5
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 6.0e-08 60.5 65 50.8
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 6.0e-08 60.5 76 46.1
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 6.0e-08 60.5 79 43.0
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 6.0e-08 60.5 86 46.5
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 7.9e-08 60.1 65 50.8
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 7.9e-08 60.1 80 45.0
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 1.0e-07 59.7 66 53.0
A06p08290 Brassica napus HOM05D007037 ORTHO05D006691 1.0e-07 59.7 66 51.5
C05p09860 Brassica napus HOM05D007037 ORTHO05D006691 1.0e-07 59.7 66 51.5
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 1.0e-07 59.7 79 41.8
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 1.0e-07 59.7 80 45.0
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 1.0e-07 59.7 74 43.2
Nitab4.5_0005074g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 1.0e-07 59.7 80 45.0
Peaxi162Scf01204g00120 Petunia axillaris HOM05D007037 ORTHO05D006691 1.0e-07 59.7 71 46.5
Sed0010286 Sechium edule HOM05D007037 ORTHO05D006691 1.0e-07 59.7 77 46.8
ClCG01G021940 Citrullus lanatus HOM05D007037 ORTHO05D006691 1.8e-07 58.9 77 46.8
Sabra04G0006400 Salix brachista HOM05D007037 ORTHO05D006691 1.8e-07 58.9 75 42.7
PGSC0003DMG400019869 Solanum tuberosum HOM05D007037 ORTHO05D006691 1.8e-07 58.9 71 47.9
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 2.3e-07 58.5 66 51.5
Sabra11G0003500 Salix brachista HOM05D007037 ORTHO05D006691 2.3e-07 58.5 71 47.9
CiPaw.10G071700 Carya illinoinensis HOM05D007037 ORTHO05D006691 3.0e-07 58.2 81 42.0
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 3.0e-07 58.2 76 48.7
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 3.9e-07 57.8 79 40.5
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 3.9e-07 57.8 78 42.3
Aa31LG1G3030 Aethionema arabicum HOM05D007037 ORTHO05D006691 6.7e-07 57.0 68 48.5
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 6.7e-07 57.0 77 48.1
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 6.7e-07 57.0 80 45.0
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 6.7e-07 57.0 70 48.6
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 8.7e-07 56.6 77 41.6
Nitab4.5_0002827g0030 Nicotiana tabacum HOM05D007037 ORTHO05D006691 8.7e-07 56.6 80 42.5
Sed0008683 Sechium edule HOM05D007037 ORTHO05D006691 8.7e-07 56.6 77 45.5
arahy.Tifrunner.gnm1.ann1.98H95S Arachis hypogaea HOM05D007037 ORTHO05D006691 1.5e-06 55.8 88 47.7
Migut.M01325 Erythranthe guttata HOM05D007037 ORTHO05D006691 2.5e-06 55.1 78 38.5
HanXRQChr01g0004211 Helianthus annuus HOM05D007037 ORTHO05D006691 2.5e-06 55.1 66 45.5
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 2.5e-06 55.1 77 44.2
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 2.5e-06 55.1 77 44.2
FvH4_3g01970 Fragaria vesca HOM05D007037 ORTHO05D006691 3.3e-06 54.7 80 41.2
Peaxi162Scf00331g00119 Petunia axillaris HOM05D007037 ORTHO05D006691 3.3e-06 54.7 83 44.6
EL10Ac8g20067 Beta vulgaris HOM05D007037 ORTHO05D006691 4.3e-06 54.3 65 46.2
AT1G62045 Arabidopsis thaliana HOM05D007037 ORTHO05D006691 7.4e-06 53.5 65 50.8
arahy.Tifrunner.gnm1.ann1.CZMF37 Arachis hypogaea HOM05D007037 ORTHO05D006691 7.4e-06 53.5 87 42.5
Haze_06807 Corylus avellana HOM05D007037 ORTHO05D006691 7.4e-06 53.5 81 40.7


User provided reference genes

Program Settings