Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 2.2e-238 828.6 421 100.0
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 6.3e-193 677.6 368 94.8
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 1.2e-188 663.3 373 89.8
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 1.2e-167 593.6 375 81.1
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 2.7e-167 592.4 382 79.8
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 2.3e-166 589.3 382 79.6
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 1.1e-160 570.5 366 80.9
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 2.4e-160 569.3 363 80.2
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 4.1e-160 568.5 325 87.1
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 4.6e-159 565.1 375 78.9
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 2.1e-156 556.2 377 75.3
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 4.0e-155 552.0 366 75.7
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 2.0e-154 549.7 376 73.1
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 5.8e-154 548.1 389 72.8
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 1.7e-153 546.6 385 74.0
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 1.7e-153 546.6 368 76.9
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 1.1e-152 543.9 381 74.3
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 5.4e-152 541.6 381 72.4
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 7.1e-152 541.2 358 76.8
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 3.5e-151 538.9 371 74.1
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 3.0e-150 535.8 368 75.3
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 3.9e-150 535.4 367 75.2
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 1.1e-149 533.9 358 76.0
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 1.9e-149 533.1 359 75.2
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 4.3e-149 531.9 377 73.2
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 7.3e-149 531.2 361 75.3
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 6.2e-148 528.1 357 74.5
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 1.1e-147 527.3 363 72.7
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 1.4e-147 526.9 359 74.9
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 2.6e-146 522.7 381 70.9
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 4.5e-146 521.9 365 72.6
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 7.6e-146 521.2 359 74.7
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 8.4e-145 517.7 358 73.5
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.4e-144 516.2 386 70.5
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 4.2e-144 515.4 359 71.9
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 5.4e-144 515.0 360 71.4
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 9.3e-144 514.2 361 74.2
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 1.2e-143 513.8 361 74.2
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 1.6e-143 513.5 358 71.8
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 6.0e-143 511.5 361 74.0
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 1.8e-142 510.0 364 71.2
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 3.0e-142 509.2 359 74.1
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 5.1e-142 508.4 356 71.9
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 1.9e-141 506.5 404 67.1
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 2.5e-141 506.1 313 80.8
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 1.6e-140 503.4 320 78.8
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 2.1e-140 503.1 362 69.3
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 4.8e-140 501.9 360 70.3
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 1.4e-139 500.4 395 66.1
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 2.4e-139 499.6 365 71.0
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 5.3e-139 498.4 355 69.9
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 6.9e-139 498.0 357 72.3
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.2e-138 497.3 384 68.8
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 4.5e-138 495.4 319 79.0
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 9.9e-138 494.2 317 77.6
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 9.9e-138 494.2 398 66.1
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 1.3e-137 493.8 414 64.7
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 2.2e-137 493.0 325 76.3
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 2.9e-137 492.7 355 71.3
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 4.9e-137 491.9 363 71.3
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 6.4e-137 491.5 325 75.7
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 8.4e-137 491.1 355 71.0
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 1.1e-136 490.7 361 70.4
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 1.4e-136 490.3 314 77.4
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 1.4e-136 490.3 376 69.1
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 1.9e-136 490.0 355 71.3
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 2.4e-136 489.6 355 70.1
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 3.2e-136 489.2 372 67.5
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 5.5e-136 488.4 352 71.9
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 2.1e-135 486.5 354 70.3
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 2.1e-135 486.5 355 69.9
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 6.0e-135 485.0 388 65.5
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 1.3e-134 483.8 365 68.8
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 3.0e-134 482.6 355 69.9
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 3.0e-134 482.6 319 73.7
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 3.0e-134 482.6 362 67.4
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 1.1e-133 480.7 387 65.1
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 1.9e-133 479.9 365 67.9
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 4.3e-133 478.8 373 66.2
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 5.6e-133 478.4 368 67.9
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 9.6e-133 477.6 363 68.3
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 1.6e-132 476.9 354 68.9
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.6e-132 476.9 381 66.7
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 8.2e-132 474.6 317 76.3
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 6.9e-131 471.5 323 73.1
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 1.3e-129 467.2 316 74.7
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 1.7e-129 466.8 323 72.8
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 2.9e-129 466.1 360 67.5
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 6.5e-129 464.9 321 72.6
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 6.5e-129 464.9 321 72.6
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 8.4e-129 464.5 284 81.0
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 1.9e-128 463.4 368 64.7
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 2.5e-128 463.0 293 78.2
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 3.2e-128 462.6 291 78.4
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 4.2e-128 462.2 354 67.2
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 4.2e-128 462.2 265 87.9
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 4.2e-128 462.2 327 72.8
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 1.8e-126 456.8 429 59.0
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 5.1e-126 455.3 311 72.7
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 6.7e-126 454.9 316 70.9
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 3.3e-125 452.6 352 69.0
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 2.2e-124 449.9 311 72.0
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 8.2e-116 421.4 258 79.5
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.4e-115 420.6 258 81.0
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 1.1e-104 384.4 304 64.1
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 4.2e-104 382.5 375 56.3
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 8.0e-103 378.3 316 60.1
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 7.4e-101 371.7 261 71.6
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 4.8e-100 369.0 289 65.1
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 8.2e-100 368.2 363 57.6
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 4.1e-99 365.9 328 56.7
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.6e-98 364.0 382 55.2
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 3.5e-98 362.8 348 56.9
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 3.5e-98 362.8 242 75.6
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 2.3e-94 350.1 295 64.7
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 1.2e-93 347.8 359 54.9
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 8.0e-87 325.1 195 81.5
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 5.7e-85 318.9 345 50.7
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 5.7e-85 318.9 287 58.2
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 7.5e-85 318.5 273 64.5
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 7.2e-80 302.0 176 86.9
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 6.8e-78 295.4 194 76.8
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.8e-75 287.3 193 76.2
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 4.1e-75 286.2 198 74.2
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.6e-71 274.2 359 40.7
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 5.8e-69 265.8 198 74.2
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 5.4e-67 259.2 165 81.8
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 9.5e-64 248.4 203 63.5
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 2.1e-58 230.7 333 40.2
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 6.6e-57 225.7 171 65.5
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.5e-56 224.6 169 68.6
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 1.8e-54 217.6 341 39.0
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 1.4e-51 208.0 285 40.0
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 3.9e-49 199.9 258 44.2
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 5.1e-49 199.5 165 58.8
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 1.1e-48 198.4 148 66.9
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.1e-48 198.4 123 74.8
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 1.2e-47 194.9 157 65.0
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.7e-44 184.5 357 35.0
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.8e-39 167.2 129 65.9
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 1.3e-33 148.3 87 85.1
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 3.9e-33 146.7 119 60.5
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 5.6e-32 142.9 158 53.8
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 1.1e-30 138.7 95 71.6
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 7.4e-24 115.9 70 78.6
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 2.8e-23 114.0 184 42.4
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 6.4e-20 102.8 95 57.9
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 6.0e-18 96.3 71 66.2
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 7.9e-10 69.3 43 72.1


User provided reference genes

Program Settings