Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 2.3e-100 369.0 203 100.0
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 3.6e-61 238.8 160 79.4
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 3.1e-52 209.1 160 76.2
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 3.5e-48 195.7 164 72.0
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 6.0e-32 141.7 200 48.5
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 6.0e-32 141.7 200 48.5
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 2.3e-31 139.8 165 55.2
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 2.1e-29 133.3 198 47.5
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 2.8e-29 132.9 202 47.5
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 2.8e-29 132.9 174 57.5
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 4.8e-29 132.1 207 45.9
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 4.8e-29 132.1 207 46.4
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 1.5e-27 127.1 205 45.9
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 3.4e-27 125.9 201 45.3
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 4.5e-27 125.6 198 47.5
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 5.9e-27 125.2 209 44.5
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 5.9e-27 125.2 198 48.0
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 1.3e-26 124.0 203 43.8
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 1.3e-26 124.0 200 44.5
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.9e-26 122.9 210 44.3
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 2.9e-26 122.9 165 53.3
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 5.0e-26 122.1 207 43.5
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 1.1e-25 120.9 147 55.8
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 1.9e-25 120.2 206 44.7
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 4.2e-25 119.0 204 44.1
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 7.2e-25 118.2 213 46.0
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 9.3e-25 117.9 213 46.0
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 1.2e-24 117.5 198 49.5
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 3.5e-24 115.9 164 50.0
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 4.6e-24 115.5 192 42.2
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.3e-23 114.0 206 43.2
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 1.1e-22 110.9 194 47.4
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 1.1e-22 110.9 198 43.9
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 1.5e-22 110.5 217 40.1
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.7e-22 108.6 203 41.9
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.7e-22 108.6 203 41.9
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 7.4e-22 108.2 214 38.8
Psat1g185920 Pisum sativum HOM05D001921 ORTHO05D001784 7.4e-22 108.2 219 40.2
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 9.7e-22 107.8 203 41.4
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 1.3e-21 107.5 178 45.5
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 4.8e-21 105.5 177 46.3
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 4.8e-21 105.5 177 45.8
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 6.3e-21 105.1 202 42.6
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 1.1e-20 104.4 202 43.6
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 3.1e-20 102.8 204 43.6
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 1.5e-19 100.5 184 42.4
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.0e-19 100.1 195 35.9
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 2.6e-19 99.8 191 43.5
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.6e-19 99.8 191 43.5
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.6e-19 99.8 191 43.5
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 2.6e-19 99.8 213 41.8
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 7.7e-19 98.2 219 39.7
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 1.0e-18 97.8 188 46.3
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 1.0e-18 97.8 191 41.9
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 2.2e-18 96.7 223 35.4
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.9e-18 96.3 205 40.5
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 3.8e-18 95.9 204 44.1
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.0e-18 95.5 204 44.1
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 5.0e-18 95.5 196 39.8
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 6.5e-18 95.1 221 38.5
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 1.1e-17 94.4 172 39.5
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.4e-17 94.0 213 36.2
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 3.2e-17 92.8 203 36.5
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 5.5e-17 92.0 193 40.4
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 5.5e-17 92.0 219 37.0
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 7.2e-17 91.7 201 37.3
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 2.7e-16 89.7 186 38.2
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 6.1e-16 88.6 165 42.4
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 6.1e-16 88.6 191 40.3
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 7.9e-16 88.2 229 33.6
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 7.9e-16 88.2 201 35.8
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 1.0e-15 87.8 174 41.4
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 3.9e-15 85.9 218 34.9
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 5.1e-15 85.5 221 34.4
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 5.1e-15 85.5 163 39.9
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 6.7e-15 85.1 194 39.7
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 8.8e-15 84.7 161 42.9
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 1.5e-14 84.0 209 35.9
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 2.5e-14 83.2 186 37.6
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 2.5e-14 83.2 186 37.6
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.5e-14 83.2 204 32.8
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 6.3e-13 78.6 165 37.0
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 6.3e-13 78.6 165 37.0
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 8.2e-13 78.2 165 37.0
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 1.1e-12 77.8 187 36.4
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 1.1e-12 77.8 165 37.0
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 1.1e-12 77.8 165 37.0
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 1.4e-12 77.4 165 37.0
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 1.4e-12 77.4 221 33.9
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 2.4e-12 76.6 164 34.8
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 4.1e-12 75.9 206 31.6
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 4.1e-12 75.9 195 35.9
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 6.9e-12 75.1 164 34.1
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 9.1e-12 74.7 181 35.4
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 2.0e-11 73.6 193 36.3
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 2.0e-11 73.6 232 32.3
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 2.0e-11 73.6 198 36.9
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 2.0e-11 73.6 214 32.7
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 2.6e-11 73.2 164 35.4
Migut.G00240 Erythranthe guttata HOM05D001921 ORTHO05D001784 2.6e-11 73.2 214 31.8
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 4.5e-11 72.4 168 35.1
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 5.9e-11 72.0 216 31.9
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.3e-10 70.9 51 70.6
Eucgr.B01216 Eucalyptus grandis HOM05D001921 ORTHO05D001784 2.2e-10 70.1 132 38.6
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 2.9e-10 69.7 165 36.4
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 2.9e-10 69.7 167 34.7
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 2.9e-10 69.7 214 31.8
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 5.0e-10 68.9 224 31.2
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 1.4e-09 67.4 198 28.8
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 1.4e-09 67.4 172 33.7
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.9e-09 67.0 50 70.0
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 2.5e-09 66.6 210 31.9
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.5e-09 66.6 201 34.3
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 3.2e-09 66.2 194 34.0
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 7.2e-09 65.1 203 36.0
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 9.4e-09 64.7 83 50.6
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 9.4e-09 64.7 177 34.5
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.6e-08 63.9 198 30.8
Cc03_g02690 Coffea canephora HOM05D001921 ORTHO05D001784 2.1e-08 63.5 116 43.1
DCAR_002429 Daucus carota HOM05D001921 ORTHO05D001784 2.1e-08 63.5 219 29.2
PSO782G1936 Papaver somniferum HOM05D001921 ORTHO05D001784 2.7e-08 63.2 56 58.9
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 3.6e-08 62.8 162 35.2
SalBow2G1161 Salvia bowleyana HOM05D001921 ORTHO05D001784 3.6e-08 62.8 94 47.9
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 3.6e-08 62.8 222 32.0
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 4.7e-08 62.4 81 49.4
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 4.7e-08 62.4 223 31.8
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 6.1e-08 62.0 106 42.5
Migut.N00134 Erythranthe guttata HOM05D001921 ORTHO05D001784 3.9e-07 59.3 185 32.4
unitig_32.g11745 Utricularia gibba HOM05D001921 ORTHO05D001784 6.7e-07 58.5 195 31.3
SalBow5G1185 Salvia bowleyana HOM05D001921 ORTHO05D001784 1.1e-06 57.8 178 36.0
SalBow5G3126 Salvia bowleyana HOM05D001921 ORTHO05D001784 1.1e-06 57.8 178 36.0
Lsat_1_v5_gn_5_51861 Lactuca sativa HOM05D001921 ORTHO05D001784 1.5e-06 57.4 51 62.7
Peaxi162Scf00095g00034 Petunia axillaris HOM05D001921 ORTHO05D001784 2.6e-06 56.6 182 36.8
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 5.7e-06 55.5 189 28.6
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 5.7e-06 55.5 54 50.0
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 9.7e-06 54.7 173 34.1


User provided reference genes

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