Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 9.2e-60 233.4 122 100.0
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 1.2e-48 196.4 124 84.7
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 2.3e-47 192.2 124 81.5
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.5e-46 189.5 121 79.3
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.5e-46 189.5 121 79.3
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.5e-46 189.5 121 79.3
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 3.7e-45 184.9 118 81.4
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 6.4e-45 184.1 121 76.0
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 2.4e-44 182.2 123 78.0
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 9.2e-44 180.3 122 74.6
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 1.6e-43 179.5 111 82.0
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 2.1e-43 179.1 122 74.6
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 7.8e-43 177.2 119 76.5
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 1.0e-42 176.8 122 71.3
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 1.3e-42 176.4 123 74.0
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 2.3e-42 175.6 122 73.8
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 2.3e-42 175.6 122 74.6
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 3.0e-42 175.3 110 79.1
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 5.1e-42 174.5 122 69.7
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 5.1e-42 174.5 122 69.7
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 5.1e-42 174.5 122 69.7
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 5.1e-42 174.5 122 69.7
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 6.6e-42 174.1 124 75.8
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 6.6e-42 174.1 122 69.7
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 3.3e-41 171.8 115 74.8
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 3.3e-41 171.8 115 74.8
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 3.3e-41 171.8 115 74.8
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 3.3e-41 171.8 115 74.8
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 4.3e-41 171.4 115 74.8
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 4.3e-41 171.4 121 72.7
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 5.6e-41 171.0 123 74.8
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 9.5e-41 170.2 123 73.2
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.6e-40 169.5 123 73.2
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 2.1e-40 169.1 122 73.8
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 2.8e-40 168.7 118 72.0
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 2.8e-40 168.7 118 72.9
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 4.7e-40 167.9 124 74.2
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 6.2e-40 167.5 114 74.6
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 6.2e-40 167.5 113 75.2
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 1.1e-39 166.8 116 74.1
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 1.1e-39 166.8 116 74.1
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 1.1e-39 166.8 123 73.2
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.1e-39 166.8 123 72.4
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 5.2e-39 164.5 118 72.9
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 6.8e-39 164.1 118 70.3
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 1.5e-38 162.9 115 71.3
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 3.4e-38 161.8 120 71.7
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 7.6e-38 160.6 115 71.3
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 4.9e-37 157.9 124 67.7
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 6.4e-37 157.5 96 82.3
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 1.1e-36 156.8 116 67.2
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 1.9e-36 156.0 117 67.5
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 1.9e-36 156.0 118 67.8
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 4.1e-36 154.8 122 66.4
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 9.2e-36 153.7 96 82.3
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 1.2e-35 153.3 113 69.0
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 1.6e-35 152.9 113 69.0
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 2.1e-35 152.5 115 69.6
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 3.5e-35 151.8 113 69.0
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 4.6e-35 151.4 118 66.9
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 1.0e-34 150.2 118 65.3
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 1.3e-34 149.8 121 63.6
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 1.7e-34 149.4 100 75.0
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 2.3e-34 149.1 98 76.5
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 2.3e-34 149.1 118 66.1
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 3.0e-34 148.7 109 69.7
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 3.0e-34 148.7 116 66.4
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 5.1e-34 147.9 107 68.2
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 6.6e-34 147.5 111 66.7
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 6.6e-34 147.5 97 80.4
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 8.6e-34 147.1 99 74.7
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 8.6e-34 147.1 97 76.3
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 8.6e-34 147.1 109 67.9
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 1.5e-33 146.4 114 65.8
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 1.5e-33 146.4 114 65.8
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 2.5e-33 145.6 121 61.2
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 7.3e-33 144.1 111 64.0
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 7.3e-33 144.1 116 64.7
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 9.6e-33 143.7 122 60.7
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.6e-32 142.9 115 61.7
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 2.1e-32 142.5 116 64.7
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 2.1e-32 142.5 98 76.5
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 8.1e-32 140.6 118 61.0
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 1.8e-31 139.4 119 63.0
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 3.1e-31 138.7 119 63.0
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 6.8e-31 137.5 119 61.3
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 2.0e-30 136.0 92 73.9
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 2.6e-30 135.6 113 64.6
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 2.6e-30 135.6 118 65.3
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 2.6e-30 135.6 118 65.3
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 4.4e-30 134.8 113 62.8
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 7.6e-30 134.0 111 63.1
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 7.6e-30 134.0 124 61.3
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 9.9e-30 133.7 124 59.7
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 2.2e-29 132.5 122 58.2
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 8.4e-29 130.6 120 60.8
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 1.1e-28 130.2 120 53.3
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 5.4e-28 127.9 118 57.6
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 1.6e-27 126.3 114 60.5
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 4.6e-27 124.8 124 59.7
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 1.0e-26 123.6 101 68.3
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 3.0e-26 122.1 101 67.3
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 3.9e-26 121.7 113 57.5
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 8.7e-26 120.6 82 72.0
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 9.6e-25 117.1 88 64.8
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 3.6e-24 115.2 111 55.9
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 1.1e-23 113.6 114 53.5
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 1.8e-23 112.8 113 55.8
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 6.9e-23 110.9 91 64.8
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 6.9e-23 110.9 91 64.8
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 9.0e-23 110.5 111 52.3
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 7.6e-22 107.5 115 50.4
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 8.4e-21 104.0 125 48.8
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 1.9e-20 102.8 100 57.0
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 8.7e-18 94.0 116 47.4
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 2.8e-16 89.0 121 47.1
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 4.5e-14 81.6 54 77.8
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.7e-13 79.7 96 46.9
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 6.0e-11 71.2 82 46.3


User provided reference genes

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