Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 1.3e-239 832.8 479 100.0
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 3.3e-177 625.5 416 83.9
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 1.8e-172 609.8 426 76.3
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 5.2e-159 565.1 432 73.8
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 3.1e-143 512.7 447 67.8
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 9.9e-142 507.7 427 71.2
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 6.0e-131 471.9 427 67.2
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 4.0e-127 459.1 429 65.5
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 5.5e-124 448.7 431 66.1
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 1.2e-118 431.0 462 55.4
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 1.1e-116 424.5 437 60.2
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 4.2e-116 422.5 463 59.8
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 1.6e-115 420.6 459 57.1
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 1.5e-113 414.1 452 59.7
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 4.3e-113 412.5 464 58.6
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 9.6e-113 411.4 467 57.6
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 8.2e-112 408.3 447 57.9
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 8.2e-112 408.3 447 57.9
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 8.2e-112 408.3 447 57.9
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.0e-110 403.7 453 57.2
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 5.9e-110 402.1 446 57.0
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 1.0e-109 401.4 450 56.0
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 3.8e-109 399.4 458 55.2
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 5.5e-108 395.6 460 57.6
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 3.5e-107 392.9 452 55.3
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 5.1e-106 389.0 459 53.6
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 5.1e-106 389.0 461 55.5
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 7.4e-105 385.2 433 55.0
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 1.3e-104 384.4 462 53.5
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 6.3e-104 382.1 457 54.3
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 1.1e-103 381.3 469 52.7
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 1.1e-103 381.3 452 52.7
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 3.1e-103 379.8 472 54.4
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 4.1e-103 379.4 280 74.6
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 3.4e-102 376.3 483 50.7
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 5.9e-102 375.6 430 60.5
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 1.3e-101 374.4 474 53.6
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 1.7e-101 374.0 442 52.7
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 1.7e-101 374.0 451 53.9
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 2.9e-101 373.2 466 51.5
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 3.8e-101 372.9 465 52.9
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 3.8e-101 372.9 458 52.8
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 5.0e-101 372.5 437 55.6
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 6.5e-101 372.1 455 53.4
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 6.5e-101 372.1 451 53.2
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 8.5e-101 371.7 483 50.5
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 1.9e-100 370.5 478 50.8
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 2.5e-100 370.2 447 52.8
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 7.2e-100 368.6 464 51.9
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 7.2e-100 368.6 461 49.7
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.6e-99 367.5 447 52.6
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 2.1e-99 367.1 461 54.9
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 1.1e-97 361.3 473 50.7
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 2.0e-97 360.5 487 52.6
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 4.3e-97 359.4 465 53.5
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 4.3e-97 359.4 461 51.8
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 5.7e-97 359.0 473 50.7
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 8.2e-96 355.1 465 51.2
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 1.1e-95 354.8 477 49.9
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.1e-95 354.8 446 51.6
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 1.4e-95 354.4 467 49.3
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 3.1e-95 353.2 502 48.2
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 3.1e-95 353.2 457 52.3
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 4.1e-95 352.8 443 51.0
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 9.1e-95 351.7 505 48.5
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 1.2e-94 351.3 462 49.4
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 2.0e-94 350.5 464 49.4
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 3.8e-93 346.3 444 51.1
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 2.5e-92 343.6 478 47.5
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 4.2e-92 342.8 439 48.3
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.6e-91 340.9 440 50.0
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 1.6e-91 340.9 460 49.3
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.1e-91 340.5 440 49.8
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 2.1e-91 340.5 431 52.0
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 6.1e-91 339.0 415 52.0
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 7.9e-91 338.6 457 52.5
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 1.4e-90 337.8 452 50.9
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 2.3e-90 337.0 431 49.7
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 5.1e-90 335.9 475 47.8
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 1.1e-89 334.7 470 50.2
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.1e-89 334.7 455 49.0
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 1.1e-89 334.7 455 49.0
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.1e-87 328.2 418 49.0
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 4.1e-87 326.2 455 48.8
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 2.2e-85 320.5 403 49.4
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 3.2e-84 316.6 432 48.8
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 9.4e-84 315.1 389 53.5
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 1.2e-83 314.7 450 47.8
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 2.7e-83 313.5 451 47.7
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 2.3e-82 310.5 429 47.8
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 4.0e-82 309.7 437 48.1
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 8.8e-82 308.5 433 47.6
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 1.1e-81 308.1 474 46.8
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 1.1e-81 308.1 429 47.3
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 2.0e-81 307.4 435 47.6
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 7.5e-81 305.4 375 53.1
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 2.8e-80 303.5 450 47.3
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 5.9e-78 295.8 450 45.8
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 6.8e-74 282.3 295 55.3
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 8.8e-74 282.0 264 62.1
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 1.5e-73 281.2 515 41.0
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 9.8e-73 278.5 286 58.4
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 1.6e-70 271.2 435 43.0
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 4.2e-68 263.1 339 49.9
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 2.6e-65 253.8 523 38.4
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 6.3e-64 249.2 327 47.4
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 1.1e-63 248.4 403 41.7
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 4.0e-58 229.9 284 50.4
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 4.0e-58 229.9 155 75.5
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 2.6e-57 227.3 409 37.7
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 2.9e-56 223.8 472 40.5
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 1.7e-40 171.4 401 33.7
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 6.6e-37 159.5 456 32.9
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 3.3e-36 157.1 96 79.2
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 9.5e-36 155.6 234 48.3
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 4.4e-33 146.7 384 34.9
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 7.1e-31 139.4 136 52.9
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 1.6e-30 138.3 138 61.6
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 1.9e-28 131.3 443 31.2
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 1.1e-26 125.6 403 30.3
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 3.1e-26 124.0 156 47.4
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.5e-25 121.7 72 80.6
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 8.4e-24 115.9 72 79.2
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 5.4e-23 113.2 105 63.8
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.2e-22 112.1 112 57.1
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 6.9e-18 96.3 118 54.2
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 9.0e-18 95.9 399 29.8
FAN15G2853 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.7e-16 91.7 59 74.6
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 3.5e-14 84.0 85 56.5
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-12 77.0 93 40.9
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 2.4e-10 71.2 123 33.3
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 3.1e-10 70.9 128 32.8
TAR625G1091 Trochodendron aralioides HOM05D003946 ORTHO05D004485 9.0e-10 69.3 123 33.3
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 1.5e-09 68.6 85 38.8
CDE02G3171 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 3.4e-09 67.4 128 29.7
CDE04G0594 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 4.5e-09 67.0 128 29.7
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 4.5e-09 67.0 128 32.0
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 5.8e-09 66.6 128 31.2
PRCOL_00000793 Prasinoderma coloniale HOM05D002462 ORTHO05D007680 5.8e-09 66.6 139 29.5
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 1.7e-08 65.1 193 30.6
TAR636G0475 Trochodendron aralioides HOM05D003946 ORTHO05D004485 2.9e-08 64.3 123 30.9
Gohir.D05G008000 Gossypium hirsutum HOM05D003946 ORTHO05D004485 8.4e-08 62.8 123 29.3
Gorai.009G008100 Gossypium raimondii HOM05D003946 ORTHO05D004485 8.4e-08 62.8 123 29.3
ECA234G2728 Erigeron canadensis HOM05D004005 ORTHO05D004876 1.4e-07 62.0 123 30.1
Lj5A239G80 Lonicera japonica HOM05D001310 ORTHO05D001283 1.4e-07 62.0 138 29.7
Nn2g15616 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.4e-07 62.0 47 68.1
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 1.9e-07 61.6 172 29.7
Nitab4.5_0004556g0020 Nicotiana tabacum HOM05D001310 ORTHO05D001283 9.3e-07 59.3 122 32.8
Migut.B00605 Erythranthe guttata HOM05D001310 ORTHO05D001283 1.2e-06 58.9 117 34.2
SalBow5G0105 Salvia bowleyana HOM05D001310 ORTHO05D001283 1.6e-06 58.5 132 31.8
Solyc10g047300.2 Solanum lycopersicum HOM05D001310 ORTHO05D001283 2.7e-06 57.8 117 32.5
Sopen10g017560 Solanum pennellii HOM05D001310 ORTHO05D001283 3.5e-06 57.4 117 31.6
TWI38G1376 Tripterygium wilfordii HOM05D006651 ORTHO05D008231 3.5e-06 57.4 107 28.0
Dinv19605 Davidia involucrata HOM05D006651 ORTHO05D008231 4.6e-06 57.0 107 28.0
Sp3g22860 Schrenkiella parvula HOM05D000371 ORTHO05D001484 4.6e-06 57.0 124 30.6
ATR0564G362 Amborella trichopoda HOM05D001310 ORTHO05D001283 6.0e-06 56.6 125 31.2
Sc18g0006830 Simmondsia chinensis HOM05D001310 ORTHO05D001283 6.0e-06 56.6 132 29.5
Hund05592 Selenicereus undatus HOM05D000371 ORTHO05D001484 7.9e-06 56.2 114 35.1


User provided reference genes

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