Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 2.1e-77 293.1 158 100.0
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 9.7e-75 284.3 156 98.1
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 4.6e-69 265.4 153 94.8
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 1.0e-68 264.2 159 90.6
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 2.5e-67 259.6 158 88.6
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.7e-66 256.9 154 91.6
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 2.0e-64 250.0 143 93.7
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 1.9e-62 243.4 143 90.9
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 3.2e-62 242.7 156 85.9
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 4.2e-62 242.3 153 85.6
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 7.2e-62 241.5 154 86.4
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 7.2e-62 241.5 140 92.1
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 2.1e-61 240.0 153 85.0
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 2.7e-61 239.6 160 81.9
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 4.6e-61 238.8 154 85.7
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 4.6e-61 238.8 158 81.0
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 6.1e-61 238.4 154 84.4
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 6.1e-61 238.4 154 85.1
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 1.8e-60 236.9 159 84.9
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 3.0e-60 236.1 159 84.3
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 6.7e-60 235.0 158 81.6
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 6.7e-60 235.0 149 85.9
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 8.8e-60 234.6 133 94.0
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 8.8e-60 234.6 154 83.8
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 1.1e-59 234.2 152 84.9
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.1e-59 234.2 149 86.6
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.1e-59 234.2 149 86.6
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 1.5e-59 233.8 151 85.4
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 3.3e-59 232.6 151 82.1
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 4.4e-59 232.3 151 84.8
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 5.7e-59 231.9 151 84.8
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 5.7e-59 231.9 142 87.3
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 5.7e-59 231.9 151 86.1
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 7.4e-59 231.5 152 83.6
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.3e-58 230.7 148 85.8
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.3e-58 230.7 152 84.2
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 1.7e-58 230.3 142 86.6
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 2.2e-58 229.9 151 82.1
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 2.2e-58 229.9 148 85.8
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 2.2e-58 229.9 160 80.0
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 2.8e-58 229.6 142 87.3
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 4.8e-58 228.8 142 87.3
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 6.3e-58 228.4 151 84.1
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 8.2e-58 228.0 148 85.1
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 8.2e-58 228.0 147 85.7
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.4e-57 227.3 151 83.4
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 1.8e-57 226.9 151 83.4
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.8e-57 226.9 146 86.3
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.8e-57 226.9 153 81.7
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.4e-57 226.5 142 83.8
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 2.4e-57 226.5 158 78.5
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 3.1e-57 226.1 151 84.1
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 3.1e-57 226.1 148 83.1
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 4.1e-57 225.7 133 92.5
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 5.3e-57 225.3 133 92.5
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 5.3e-57 225.3 142 83.8
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 5.3e-57 225.3 142 83.8
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 6.9e-57 224.9 150 79.3
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 9.1e-57 224.6 151 82.1
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 1.2e-56 224.2 148 81.1
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 1.2e-56 224.2 162 79.6
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 1.2e-56 224.2 153 81.0
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.5e-56 223.8 146 85.6
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 1.5e-56 223.8 159 79.2
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 2.6e-56 223.0 150 81.3
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 2.6e-56 223.0 155 81.9
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 2.6e-56 223.0 151 82.1
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 3.4e-56 222.6 160 80.0
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 3.4e-56 222.6 151 80.1
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 7.7e-56 221.5 152 79.6
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.3e-55 220.7 146 80.8
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 2.9e-55 219.5 154 79.2
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 5.0e-55 218.8 154 78.6
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 5.0e-55 218.8 159 76.1
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 5.0e-55 218.8 152 80.9
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.0e-55 218.8 157 78.3
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 6.5e-55 218.4 159 74.8
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 6.5e-55 218.4 159 76.1
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 8.5e-55 218.0 158 76.6
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.1e-54 217.6 153 79.7
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 1.4e-54 217.2 153 79.1
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.4e-54 217.2 158 76.6
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 1.4e-54 217.2 152 78.9
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 1.9e-54 216.9 158 75.9
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 1.9e-54 216.9 135 89.6
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 2.5e-54 216.5 132 90.2
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 3.2e-54 216.1 155 78.7
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 5.5e-54 215.3 152 77.6
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 5.5e-54 215.3 133 88.0
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 9.4e-54 214.5 158 74.7
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.2e-53 214.2 151 78.1
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 1.2e-53 214.2 130 90.0
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 1.6e-53 213.8 138 85.5
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 3.6e-53 212.6 157 77.7
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 3.6e-53 212.6 157 77.7
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 4.7e-53 212.2 152 77.0
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 4.7e-53 212.2 155 78.7
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 4.7e-53 212.2 155 78.7
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 4.7e-53 212.2 155 78.7
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 4.7e-53 212.2 158 72.8
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 4.7e-53 212.2 154 77.9
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 6.1e-53 211.8 155 77.4
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 6.1e-53 211.8 157 77.1
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 6.1e-53 211.8 145 81.4
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 7.9e-53 211.5 158 77.2
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 7.9e-53 211.5 150 76.7
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.4e-52 210.7 162 74.7
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.4e-52 210.7 155 76.8
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.4e-52 210.7 155 76.8
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 1.8e-52 210.3 159 76.1
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 5.2e-52 208.8 158 72.2
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 6.7e-52 208.4 159 77.4
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 1.1e-51 207.6 152 77.0
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 1.5e-51 207.2 171 70.8
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 1.5e-51 207.2 152 77.0
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 1.5e-51 207.2 145 79.3
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 1.5e-51 207.2 152 77.0
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 1.5e-51 207.2 145 79.3
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 2.0e-51 206.8 167 73.1
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 2.0e-51 206.8 158 75.3
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 4.4e-51 205.7 145 80.7
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 9.7e-51 204.5 147 77.6
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 1.3e-50 204.1 158 75.3
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.7e-50 203.8 143 77.6
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 5.3e-49 198.7 147 77.6
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 1.0e-47 194.5 149 72.5
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 1.7e-47 193.7 164 70.7
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 1.7e-47 193.7 140 75.0
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 2.2e-47 193.4 135 80.7
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.5e-46 190.7 151 72.8
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 2.5e-46 189.9 130 80.8
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 9.4e-46 188.0 135 75.6
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 7.5e-43 178.3 157 70.1
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 7.5e-43 178.3 160 63.8
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 5.9e-40 168.7 130 70.0
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.0e-39 165.6 114 81.6
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 3.6e-37 159.5 121 77.7
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 8.3e-34 148.3 160 60.6
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 2.4e-33 146.7 133 64.7
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 5.0e-31 139.0 109 69.7
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 1.1e-30 137.9 84 96.4
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 1.5e-30 137.5 127 60.6
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 5.5e-30 135.6 108 69.4
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 7.5e-27 125.2 112 65.2
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 1.7e-23 114.0 107 60.7
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 3.8e-23 112.8 145 50.3
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.9e-22 110.5 77 66.2
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 3.3e-22 109.8 140 51.4
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 4.7e-21 105.9 72 84.7
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 4.7e-21 105.9 72 84.7
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 2.3e-20 103.6 161 50.9
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 2.0e-19 100.5 86 69.8
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.0e-15 88.2 66 84.8
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 2.3e-15 87.0 72 72.2
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.1e-14 84.7 64 81.2
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 3.0e-07 60.1 65 44.6


User provided reference genes

Program Settings