Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 8.0e-103 377.1 189 100.0
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 1.1e-91 340.1 186 89.8
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 4.2e-88 328.2 188 84.0
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 9.4e-88 327.0 181 86.2
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 2.7e-87 325.5 165 98.2
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 2.7e-87 325.5 188 83.5
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 3.6e-87 325.1 188 83.5
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 1.5e-85 319.7 188 83.0
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.2e-82 310.1 190 81.1
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 2.0e-82 309.3 188 81.9
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 5.5e-80 301.2 188 79.8
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 3.6e-79 298.5 187 77.5
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 1.7e-76 289.7 186 73.7
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 2.2e-76 289.3 172 83.7
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 8.3e-76 287.3 186 73.7
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 1.4e-75 286.6 186 72.6
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 4.1e-75 285.0 181 76.2
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 7.0e-75 284.3 183 75.4
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 2.7e-74 282.3 182 71.4
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 1.3e-73 280.0 181 74.0
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 2.3e-73 279.3 181 72.9
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 5.0e-73 278.1 181 73.5
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 5.0e-73 278.1 181 73.5
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 6.6e-73 277.7 183 72.7
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 6.6e-73 277.7 188 72.3
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 2.5e-72 275.8 189 69.8
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 3.3e-72 275.4 184 71.7
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 3.3e-72 275.4 188 69.7
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 7.3e-72 274.2 186 72.6
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 7.3e-72 274.2 190 70.5
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 9.5e-72 273.9 184 72.3
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 1.2e-71 273.5 188 69.1
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.6e-71 273.1 181 72.4
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.6e-71 273.1 181 72.4
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 3.6e-71 271.9 180 71.1
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 3.6e-71 271.9 181 71.8
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 3.6e-71 271.9 181 72.9
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 6.1e-71 271.2 187 67.9
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 6.1e-71 271.2 172 76.2
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 8.0e-71 270.8 188 72.9
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 8.0e-71 270.8 189 68.3
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 1.0e-70 270.4 187 71.7
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 1.4e-70 270.0 186 69.9
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 1.4e-70 270.0 184 71.2
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.1e-70 268.9 181 71.8
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 3.1e-70 268.9 189 67.7
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 8.9e-70 267.3 181 71.3
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 8.9e-70 267.3 187 67.9
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.5e-69 266.5 192 69.8
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.5e-69 266.5 188 68.6
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 2.6e-69 265.8 186 71.0
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 4.4e-69 265.0 184 70.7
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 5.8e-69 264.6 184 69.6
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 9.8e-69 263.8 188 69.1
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 1.3e-68 263.5 181 70.7
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 1.7e-68 263.1 181 70.7
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 2.2e-68 262.7 187 68.4
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 2.2e-68 262.7 181 71.3
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 4.9e-68 261.5 182 68.7
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 4.9e-68 261.5 186 67.2
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 6.4e-68 261.2 185 70.8
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 8.3e-68 260.8 183 68.9
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 1.1e-67 260.4 183 70.5
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 1.4e-67 260.0 187 68.4
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 2.4e-67 259.2 186 66.1
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 2.4e-67 259.2 184 66.8
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 9.2e-67 257.3 186 65.6
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 9.2e-67 257.3 169 72.2
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 9.2e-67 257.3 174 71.3
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.2e-66 256.9 188 67.6
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 2.0e-66 256.1 174 71.3
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 7.8e-66 254.2 186 65.6
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 7.8e-66 254.2 188 67.0
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 1.0e-65 253.8 186 64.5
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 1.0e-65 253.8 182 67.0
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 1.3e-65 253.4 169 71.6
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 3.0e-65 252.3 174 68.4
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 3.9e-65 251.9 184 65.8
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 3.9e-65 251.9 184 65.8
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 8.6e-65 250.8 172 68.6
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 1.1e-64 250.4 195 67.2
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 1.5e-64 250.0 169 70.4
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 1.5e-64 250.0 195 66.7
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 2.5e-64 249.2 186 66.7
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 3.3e-64 248.8 184 64.7
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 3.3e-64 248.8 174 66.7
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.2e-63 246.9 176 68.8
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 1.6e-63 246.5 169 69.8
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 2.1e-63 246.1 179 68.2
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 2.8e-63 245.7 184 63.6
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 2.8e-63 245.7 180 67.8
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 8.0e-63 244.2 184 62.5
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 8.0e-63 244.2 184 62.5
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 8.0e-63 244.2 184 62.5
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 8.0e-63 244.2 182 63.7
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 1.8e-62 243.0 190 62.6
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 1.2e-61 240.4 168 67.9
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 1.5e-61 240.0 169 68.0
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 9.2e-59 230.7 187 64.2
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.1e-58 229.6 176 64.8
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.0e-57 227.3 187 63.1
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 4.7e-55 218.4 165 66.1
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 1.3e-52 210.3 175 63.4
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 1.3e-52 210.3 123 78.9
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 2.9e-52 209.1 184 58.2
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 3.7e-52 208.8 165 63.6
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 6.6e-49 198.0 187 56.7
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 8.6e-49 197.6 148 66.9
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 1.5e-48 196.8 151 61.6
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 9.5e-48 194.1 182 56.0
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 1.2e-47 193.7 124 73.4
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 6.2e-47 191.4 185 55.1
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.8e-46 189.9 119 75.6
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.8e-46 189.9 120 75.8
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 1.5e-45 186.8 148 62.8
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 3.4e-45 185.7 165 58.2
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 1.6e-42 176.8 168 54.2
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 7.8e-42 174.5 148 59.5
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 3.6e-39 165.6 181 49.7
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.1e-38 164.1 110 69.1
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 2.9e-36 156.0 132 53.0
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 3.0e-33 146.0 91 73.6
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 5.1e-33 145.2 84 81.0
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 2.5e-32 142.9 151 49.0
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 4.3e-32 142.1 149 49.0
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 4.9e-28 128.6 184 41.3
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 4.9e-28 128.6 184 41.3
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 1.2e-26 124.0 189 40.7
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 1.9e-24 116.7 142 43.0
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 1.7e-20 103.6 83 63.9
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 8.4e-20 101.3 57 80.7
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 2.1e-18 96.7 110 41.8
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 1.5e-16 90.5 142 35.9
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.5e-16 90.5 142 35.9
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 2.8e-15 86.3 60 63.3
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 6.1e-10 68.6 66 54.5


User provided reference genes

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