Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G234701 Glycine max HOM05D000264 ORTHO05D000152 1.4e-60 236.1 118 100.0
Glyma.12G111400 Glycine max HOM05D000264 ORTHO05D000152 1.6e-45 186.0 115 83.5
Glyma.06G294400 Glycine max HOM05D000264 ORTHO05D000152 5.8e-27 124.4 119 57.1
VMungo1127G0862 Vigna mungo HOM05D000264 ORTHO05D000152 9.9e-27 123.6 117 58.1
Glyma.06G294100 Glycine max HOM05D000264 ORTHO05D000152 1.3e-26 123.2 109 62.4
Glyma.06G293900 Glycine max HOM05D000264 ORTHO05D000152 1.4e-25 119.8 109 59.6
Glyma.12G112400 Glycine max HOM05D000264 ORTHO05D000152 3.5e-24 115.2 112 55.4
Glyma.06G294200 Glycine max HOM05D000264 ORTHO05D000152 6.6e-23 110.9 110 57.3
Phvul.011G117400 Phaseolus vulgaris HOM05D000264 ORTHO05D000152 1.1e-22 110.2 115 51.3
Glyma.06G294000 Glycine max HOM05D000264 ORTHO05D000152 7.3e-22 107.5 97 59.8
arahy.Tifrunner.gnm1.ann1.SP93FZ Arachis hypogaea HOM05D000264 ORTHO05D000152 5.3e-12 74.7 114 42.1
Eucgr.K01004 Eucalyptus grandis HOM05D000264 ORTHO05D000152 8.4e-10 67.4 95 41.1
Nn1g06999 Nelumbo nucifera HOM05D000264 ORTHO05D000152 2.4e-09 65.9 91 40.7
Eucgr.K00687 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.2e-08 63.5 97 38.1
PGR083G1266 Punica granatum HOM05D000047 ORTHO05D000152 1.6e-08 63.2 94 36.2
Cc11_g05990 Coffea canephora HOM05D000097 ORTHO05D009673 2.1e-08 62.8 97 39.2
PGR083G2206 Punica granatum HOM05D000264 ORTHO05D000152 2.7e-08 62.4 89 37.1
Rhsim05G0188900 Rhododendron simsii HOM05D000097 ORTHO05D009673 4.6e-08 61.6 85 41.2
Cc11_g06180 Coffea canephora HOM05D000097 ORTHO05D009673 6.0e-08 61.2 97 39.2
Cc07_g18350 Coffea canephora HOM05D000097 ORTHO05D009673 2.3e-07 59.3 97 39.2
Lj6P649T13 Lonicera japonica HOM05D000264 ORTHO05D000152 3.0e-07 58.9 89 34.8
arahy.Tifrunner.gnm1.ann1.98V0PV Arachis hypogaea HOM05D000992 ORTHO05D006704 3.9e-07 58.5 110 31.8
Lj6A647T16 Lonicera japonica HOM05D000264 ORTHO05D000152 3.9e-07 58.5 103 33.0
COL.COLO4_30202 Corchorus olitorius HOM05D000264 ORTHO05D000152 6.7e-07 57.8 92 33.7
Ciclev10007078m.g Citrus clementina HOM05D000264 ORTHO05D000152 1.1e-06 57.0 90 40.0
QL12p041840 Quercus lobata HOM05D000097 ORTHO05D000041 1.1e-06 57.0 72 44.4
FvH4_3g05910 Fragaria vesca HOM05D000264 ORTHO05D000152 1.5e-06 56.6 97 35.1
Manes.11G111300 Manihot esculenta HOM05D000264 ORTHO05D000152 1.5e-06 56.6 86 38.4
Eucgr.K00701 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.9e-06 56.2 99 32.3
GSVIVG01020530001 Vitis vinifera HOM05D000264 ORTHO05D000152 1.9e-06 56.2 106 33.0
CAN.G911.30 Capsicum annuum HOM05D000264 ORTHO05D000152 2.5e-06 55.8 92 34.8
Nn1g06590 Nelumbo nucifera HOM05D000264 ORTHO05D000152 2.5e-06 55.8 97 35.1
GSVIVG01020905001 Vitis vinifera HOM05D000264 ORTHO05D000152 2.5e-06 55.8 125 28.8
Lj5A329T14 Lonicera japonica HOM05D000264 ORTHO05D000152 3.3e-06 55.5 87 33.3
SEGI_28936 Sequoiadendron giganteum HOM05D001854 ORTHO05D026129 3.3e-06 55.5 87 36.8
Sc12g0002980 Simmondsia chinensis HOM05D000264 ORTHO05D000152 3.3e-06 55.5 97 35.1
CAN.G84.45 Capsicum annuum HOM05D010878 ORTHO05D009673 4.3e-06 55.1 84 34.5
Glyma.06G294300 Glycine max HOM05D000264 ORTHO05D000152 4.3e-06 55.1 40 62.5
Lj6A649T19 Lonicera japonica HOM05D000264 ORTHO05D000152 4.3e-06 55.1 103 33.0
vmacro12293 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 4.3e-06 55.1 86 36.0
CSS0026496 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D009673 5.6e-06 54.7 84 36.9
CSS0035240 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 5.6e-06 54.7 92 31.5
Rhsim05G0189100 Rhododendron simsii HOM05D000097 ORTHO05D009673 5.6e-06 54.7 85 36.5
Sabra11G0120000 Salix brachista HOM05D000264 ORTHO05D000152 5.6e-06 54.7 87 39.1
vmacro22812 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 5.6e-06 54.7 86 34.9
CANSAT64G1402 Cannabis sativa HOM05D000264 ORTHO05D000152 7.4e-06 54.3 91 33.0
CANSAT78G1487 Cannabis sativa HOM05D000264 ORTHO05D000152 7.4e-06 54.3 94 33.0
Eucgr.H03467 Eucalyptus grandis HOM05D000264 ORTHO05D000152 7.4e-06 54.3 87 32.2
Rhsim06G0144200 Rhododendron simsii HOM05D000264 ORTHO05D000152 7.4e-06 54.3 89 34.8
Ciclev10004701m.g Citrus clementina HOM05D000264 ORTHO05D000152 9.6e-06 53.9 89 39.3
Dinv23656 Davidia involucrata HOM05D000264 ORTHO05D000152 9.6e-06 53.9 91 33.0
Lalb_Chr01g0005291 Lupinus albus HOM05D000264 ORTHO05D000152 9.6e-06 53.9 43 55.8
Rhsim10G0154500 Rhododendron simsii HOM05D010878 ORTHO05D009673 9.6e-06 53.9 83 39.8
vmacro12288 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 9.6e-06 53.9 86 36.0


User provided reference genes

Program Settings