Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 2.6e-128 462.2 257 100.0
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 2.0e-109 399.4 257 88.3
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 3.0e-105 385.6 256 85.5
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 5.9e-101 371.3 256 83.2
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 3.8e-100 368.6 256 82.8
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 1.4e-97 360.1 256 80.5
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 2.0e-93 346.3 257 79.0
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 1.3e-92 343.6 267 74.9
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 2.3e-92 342.8 254 77.6
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 2.1e-90 336.3 256 77.0
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 1.2e-88 330.5 254 76.0
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 2.3e-84 316.2 225 80.4
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 1.9e-83 313.2 254 71.3
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 1.2e-77 293.9 253 67.6
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 3.5e-77 292.4 253 67.6
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 1.9e-75 286.6 254 66.5
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 2.0e-72 276.6 243 63.8
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 9.9e-72 274.2 258 63.6
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 9.9e-72 274.2 241 65.1
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 9.9e-72 274.2 253 64.4
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 1.7e-71 273.5 227 69.2
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 2.9e-71 272.7 242 66.1
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 3.8e-71 272.3 252 64.3
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 4.9e-71 271.9 255 63.1
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 6.4e-71 271.6 254 65.0
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.1e-70 270.8 222 71.2
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 1.9e-70 270.0 230 71.3
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 9.2e-70 267.7 229 67.2
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.6e-69 266.9 252 64.3
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 2.7e-69 266.2 259 61.8
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 7.8e-69 264.6 259 61.4
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 7.8e-69 264.6 250 66.8
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 1.3e-68 263.8 259 61.4
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 1.7e-68 263.5 246 65.0
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 3.9e-68 262.3 248 63.7
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 3.9e-68 262.3 261 61.7
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 3.9e-68 262.3 266 63.2
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 8.6e-68 261.2 238 63.4
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 1.5e-67 260.4 256 60.5
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 1.9e-67 260.0 247 62.8
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 3.3e-67 259.2 269 60.2
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 3.3e-67 259.2 246 64.6
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 4.3e-67 258.8 250 63.2
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 5.6e-67 258.5 243 64.2
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 9.6e-67 257.7 263 60.5
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 3.6e-66 255.8 248 62.5
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 8.9e-65 251.1 257 61.9
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 2.0e-64 250.0 253 60.9
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 3.4e-64 249.2 248 62.9
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 3.4e-64 249.2 246 62.6
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 5.8e-64 248.4 303 53.1
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 9.9e-64 247.7 304 53.3
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 1.9e-62 243.4 267 56.9
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 2.4e-62 243.0 267 56.6
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 5.4e-62 241.9 258 57.0
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 9.3e-62 241.1 267 56.2
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 7.8e-61 238.0 250 59.6
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 7.8e-61 238.0 240 61.2
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.3e-60 236.5 213 67.1
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 1.1e-59 234.2 199 72.9
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 1.1e-59 234.2 319 49.2
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 1.1e-59 234.2 235 59.6
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 1.5e-59 233.8 223 62.3
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 1.5e-59 233.8 237 57.8
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 1.9e-59 233.4 262 56.5
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 3.3e-59 232.6 256 60.5
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 7.3e-59 231.5 241 56.8
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.3e-58 230.7 259 54.4
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.8e-58 229.6 262 54.6
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 1.1e-57 227.6 253 55.7
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 1.4e-57 227.3 222 62.6
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 5.3e-57 225.3 234 59.0
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 6.9e-57 224.9 226 59.7
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 2.0e-56 223.4 263 52.9
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 2.6e-56 223.0 222 60.8
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 5.8e-56 221.9 240 56.2
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 7.6e-56 221.5 273 52.4
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 1.3e-55 220.7 260 53.5
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 2.2e-55 219.9 226 58.0
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 6.4e-55 218.4 234 58.1
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 2.4e-54 216.5 229 57.2
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 2.7e-53 213.0 235 57.9
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 2.7e-53 213.0 229 57.6
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 2.7e-53 213.0 229 57.6
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 2.7e-53 213.0 234 57.7
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 4.6e-53 212.2 229 58.5
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 4.6e-53 212.2 231 58.4
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 4.6e-53 212.2 230 57.8
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 4.6e-53 212.2 216 62.5
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 2.3e-52 209.9 235 57.0
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 5.1e-52 208.8 246 55.3
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 1.9e-51 206.8 251 53.8
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 2.5e-51 206.5 238 54.6
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 4.3e-51 205.7 245 54.3
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 2.1e-50 203.4 229 56.3
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 2.1e-50 203.4 229 56.3
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 4.8e-50 202.2 226 56.2
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 4.8e-50 202.2 162 75.9
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 1.1e-49 201.1 229 55.9
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 2.4e-49 199.9 247 53.4
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 3.1e-49 199.5 225 56.4
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 4.0e-49 199.1 261 49.4
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 2.6e-48 196.4 229 56.3
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 4.5e-48 195.7 247 52.6
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 1.3e-47 194.1 229 55.0
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 2.7e-45 186.4 236 51.3
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 4.6e-45 185.7 247 51.4
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 3.1e-41 172.9 249 49.0
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 9.0e-41 171.4 249 47.8
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 2.6e-40 169.9 247 48.6
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 4.2e-38 162.5 121 75.2
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 8.7e-36 154.8 248 42.3
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 5.7e-35 152.1 215 49.8
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 3.1e-33 146.4 265 40.4
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 6.5e-31 138.7 164 55.5
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 5.5e-30 135.6 134 61.9
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 6.7e-28 128.6 167 49.1
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 1.7e-23 114.0 236 39.0
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 3.8e-23 112.8 140 51.4
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 4.2e-22 109.4 130 45.4
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 2.1e-21 107.1 272 33.8
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 4.2e-14 82.8 196 40.8
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 3.6e-13 79.7 168 40.5
Ca_13618_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 5.2e-12 75.9 60 68.3
Sabra10G0116500 Salix brachista HOM05D005991 ORTHO05D007408 2.8e-10 70.1 110 41.8
GSVIVG01017610001 Vitis vinifera HOM05D005991 ORTHO05D007408 8.2e-10 68.6 133 43.6
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 4.1e-09 66.2 158 37.3
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 2.0e-08 63.9 87 49.4
GSVIVG01017622001 Vitis vinifera HOM05D005991 ORTHO05D007408 7.2e-06 55.5 61 52.5


User provided reference genes

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