Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G231300 Glycine max HOM05D001065 ORTHO05D002020 8.5e-95 350.5 202 100.0
Glyma.04G247200 Glycine max HOM05D001065 ORTHO05D002020 1.0e-79 300.4 198 87.9
Glyma.06G115600 Glycine max HOM05D001065 ORTHO05D002020 1.8e-73 279.6 198 78.8
Phvul.009G127700 Phaseolus vulgaris HOM05D001065 ORTHO05D002020 5.6e-70 268.1 200 74.0
VMungo1309G1139 Vigna mungo HOM05D001065 ORTHO05D002020 3.6e-61 238.8 200 67.5
Lalb_Chr08g0241261 Lupinus albus HOM05D001065 ORTHO05D002020 5.8e-51 204.9 209 61.7
Ca_16578_v3 Cicer arietinum L. HOM05D001065 ORTHO05D002020 1.7e-50 203.4 201 66.2
Medtr3g088480 Medicago truncatula HOM05D001065 ORTHO05D002020 1.1e-49 200.7 201 66.2
Lj1g0001950 Lotus japonicus HOM05D001065 ORTHO05D002020 1.9e-46 189.9 211 60.7
Lalb_Chr11g0066081 Lupinus albus HOM05D001065 ORTHO05D002020 2.5e-46 189.5 210 60.5
TPR.G13468 Trifolium pratense HOM05D001065 ORTHO05D002020 9.6e-46 187.6 202 64.4
Psat5g086040 Pisum sativum HOM05D001065 ORTHO05D002020 1.8e-44 183.3 134 70.1
arahy.Tifrunner.gnm1.ann1.8ZSB7P Arachis hypogaea HOM05D001065 ORTHO05D002020 3.4e-43 179.1 143 65.0
arahy.Tifrunner.gnm1.ann1.D2JSQE Arachis hypogaea HOM05D001065 ORTHO05D002020 1.7e-42 176.8 212 62.3
CSS0004246 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 1.9e-38 163.3 205 53.2
CSS0047329 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 1.9e-38 163.3 205 53.2
QL09p033728 Quercus lobata HOM05D001065 ORTHO05D002020 7.3e-38 161.4 216 45.8
Haze_17517 Corylus avellana HOM05D001065 ORTHO05D002020 9.6e-38 161.0 208 51.0
Prupe.1G492600 Prunus persica HOM05D001065 ORTHO05D002020 2.8e-37 159.5 208 54.3
MD00G1030000 Malus domestica HOM05D001065 ORTHO05D002020 3.6e-37 159.1 210 54.8
CSS0034416 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 1.1e-36 157.5 137 61.3
CSS0037838 Camellia sinensis var. sinensis HOM05D001065 ORTHO05D002020 1.1e-36 157.5 137 61.3
Cpa.g.sc64.124 Carica papaya HOM05D001065 ORTHO05D002020 1.4e-36 157.1 158 53.2
FAN15G3219 Fragaria x ananassa HOM05D001065 ORTHO05D002020 1.8e-36 156.8 211 54.0
Actinidia21301 Actinidia chinensis HOM05D001065 ORTHO05D002020 2.4e-36 156.4 214 47.2
FAN24G0753 Fragaria x ananassa HOM05D001065 ORTHO05D002020 2.4e-36 156.4 211 53.6
PGR042G2649 Punica granatum HOM05D001065 ORTHO05D002020 2.4e-36 156.4 144 59.0
Actinidia15228 Actinidia chinensis HOM05D001065 ORTHO05D002020 5.3e-36 155.2 209 49.3
CANSAT25G2087 Cannabis sativa HOM05D001065 ORTHO05D002020 9.0e-36 154.5 213 50.2
ClCG11G015890 Citrullus lanatus HOM05D001065 ORTHO05D002020 1.2e-35 154.1 159 54.7
COL.COLO4_07483 Corchorus olitorius HOM05D001065 ORTHO05D002020 1.2e-35 154.1 200 56.5
Eucgr.F03812 Eucalyptus grandis HOM05D001065 ORTHO05D002020 1.2e-35 154.1 137 61.3
FvH4_2g27500 Fragaria vesca HOM05D001065 ORTHO05D002020 1.2e-35 154.1 211 53.6
FAN27G1699 Fragaria x ananassa HOM05D001065 ORTHO05D002020 1.2e-35 154.1 211 53.1
Manes.02G166500 Manihot esculenta HOM05D001065 ORTHO05D002020 2.6e-35 152.9 138 57.2
Manes.18G080000 Manihot esculenta HOM05D001065 ORTHO05D002020 4.4e-35 152.1 138 55.1
CsaV3_4G028080 Cucumis sativus L. HOM05D001065 ORTHO05D002020 7.6e-35 151.4 158 52.5
Atru.chr13.1528 Acer truncatum HOM05D001065 ORTHO05D002020 1.4e-33 147.1 137 55.5
Duzib116G0856 Durio zibethinus HOM05D001065 ORTHO05D002020 1.4e-33 147.1 199 57.3
RcHm_v2.0_Chr6g0296331 Rosa chinensis HOM05D001065 ORTHO05D002020 1.4e-33 147.1 142 58.5
Duzib093G1487 Durio zibethinus HOM05D001065 ORTHO05D002020 2.4e-33 146.4 202 56.4
MD00G1041900 Malus domestica HOM05D001065 ORTHO05D002020 2.4e-33 146.4 206 50.5
VMungo0647G1964 Vigna mungo HOM05D001065 ORTHO05D002020 7.1e-33 144.8 197 46.7
Gohir.D05G271100 Gossypium hirsutum HOM05D001065 ORTHO05D002020 9.3e-33 144.4 130 56.9
Gohir.A05G269200 Gossypium hirsutum HOM05D001065 ORTHO05D002020 1.2e-32 144.1 130 57.7
Sed0027165 Sechium edule HOM05D001065 ORTHO05D002020 1.2e-32 144.1 164 50.0
Thecc.08G129700 Theobroma cacao HOM05D001065 ORTHO05D002020 1.6e-32 143.7 202 56.9
vmacro12617 Vaccinium macrocarpon HOM05D001065 ORTHO05D002020 1.6e-32 143.7 214 46.7
Ciclev10000405m.g Citrus clementina HOM05D001065 ORTHO05D002020 2.1e-32 143.3 153 52.3
Gorai.009G284000 Gossypium raimondii HOM05D001065 ORTHO05D002020 2.1e-32 143.3 130 56.2
Duzib041G0679 Durio zibethinus HOM05D001065 ORTHO05D002020 3.5e-32 142.5 130 56.2
THA.LOC104804988 Tarenaya hassleriana HOM05D001065 ORTHO05D002020 6.0e-32 141.7 131 56.5
Sed0006418 Sechium edule HOM05D001065 ORTHO05D002020 7.8e-32 141.4 162 48.1
Phvul.001G071900 Phaseolus vulgaris HOM05D001065 ORTHO05D002020 1.3e-31 140.6 131 55.0
A06p17790 Brassica napus HOM05D001065 ORTHO05D002020 1.7e-31 140.2 170 48.2
Sp1g19260 Schrenkiella parvula HOM05D001065 ORTHO05D002020 1.7e-31 140.2 134 54.5
THA.LOC104800230 Tarenaya hassleriana HOM05D001065 ORTHO05D002020 5.1e-31 138.7 133 55.6
TAR376G1110 Trochodendron aralioides HOM05D001065 ORTHO05D002020 5.1e-31 138.7 140 55.0
TAR628G1385 Trochodendron aralioides HOM05D001065 ORTHO05D002020 5.1e-31 138.7 138 55.8
Aa31LG7G5670 Aethionema arabicum HOM05D001065 ORTHO05D002020 6.6e-31 138.3 134 55.2
Nn5g28395 Nelumbo nucifera HOM05D001065 ORTHO05D002020 6.6e-31 138.3 139 55.4
Nn5g28410 Nelumbo nucifera HOM05D001065 ORTHO05D002020 6.6e-31 138.3 139 55.4
Gohir.D02G079200 Gossypium hirsutum HOM05D001065 ORTHO05D002020 8.7e-31 137.9 127 56.7
BcaC05g26089 Brassica carinata HOM05D001065 ORTHO05D002020 1.1e-30 137.5 156 50.6
C05p20680 Brassica napus HOM05D001065 ORTHO05D002020 1.1e-30 137.5 156 50.6
BolC5t30767H Brassica oleracea HOM05D001065 ORTHO05D002020 1.1e-30 137.5 156 50.6
Gohir.A02G071900 Gossypium hirsutum HOM05D001065 ORTHO05D002020 1.1e-30 137.5 127 55.9
CARHR022060 Cardamine hirsuta HOM05D001065 ORTHO05D002020 1.5e-30 137.1 155 51.0
Gorai.005G088500 Gossypium raimondii HOM05D001065 ORTHO05D002020 1.5e-30 137.1 127 55.9
Lsat_1_v5_gn_6_97621 Lactuca sativa HOM05D001065 ORTHO05D002020 1.5e-30 137.1 141 52.5
BcaB07g32167 Brassica carinata HOM05D001065 ORTHO05D002020 2.5e-30 136.3 156 50.6
AL1G34870 Arabidopsis lyrata HOM05D001065 ORTHO05D002020 3.3e-30 136.0 131 55.7
BraA06t24871Z Brassica rapa HOM05D001065 ORTHO05D002020 4.3e-30 135.6 157 50.3
Glyma.13G031300 Glycine max HOM05D001065 ORTHO05D002020 4.3e-30 135.6 201 46.8
Peaxi162Scf00051g01715 Petunia axillaris HOM05D001065 ORTHO05D002020 5.6e-30 135.2 204 42.2
Carub.0001s2114 Capsella rubella HOM05D001065 ORTHO05D002020 7.3e-30 134.8 134 53.7
Glyma.14G153000 Glycine max HOM05D001065 ORTHO05D002020 7.3e-30 134.8 201 45.8
Potri.002G080600 Populus trichocarpa HOM05D001065 ORTHO05D002020 1.3e-29 134.0 155 50.3
Potri.005G180800 Populus trichocarpa HOM05D001065 ORTHO05D002020 1.6e-29 133.7 159 49.7
Cc10_g12300 Coffea canephora HOM05D001065 ORTHO05D002020 2.1e-29 133.3 136 53.7
Thhalv10006819m.g Eutrema salsugineum HOM05D001065 ORTHO05D002020 2.1e-29 133.3 134 53.0
Nitab4.5_0009546g0010 Nicotiana tabacum HOM05D001065 ORTHO05D002020 2.8e-29 132.9 210 46.2
AT1G21700 Arabidopsis thaliana HOM05D001065 ORTHO05D002020 3.6e-29 132.5 132 55.3
Nn1g08891 Nelumbo nucifera HOM05D001065 ORTHO05D002020 4.8e-29 132.1 140 54.3
Solyc06g060120.3 Solanum lycopersicum HOM05D001065 ORTHO05D002020 4.8e-29 132.1 212 40.6
A08p28850 Brassica napus HOM05D001065 ORTHO05D002020 8.1e-29 131.3 149 51.7
CiPaw.16G025500 Carya illinoinensis HOM05D001065 ORTHO05D002020 1.4e-28 130.6 138 52.2
PSO170G0954 Papaver somniferum HOM05D001065 ORTHO05D002020 1.4e-28 130.6 138 51.4
BraA08t34815Z Brassica rapa HOM05D001065 ORTHO05D002020 1.8e-28 130.2 149 51.0
HanXRQChr05g0149021 Helianthus annuus HOM05D001065 ORTHO05D002020 1.8e-28 130.2 134 51.5
MBI06_g35523_MAGBIO Magnolia biondii HOM05D001065 ORTHO05D002020 2.4e-28 129.8 143 47.6
Sopen06g020240 Solanum pennellii HOM05D001065 ORTHO05D002020 2.4e-28 129.8 225 39.1
SGA_v2.0_scaffold24G10435 Striga asiatica HOM05D001065 ORTHO05D002020 4.0e-28 129.0 152 49.3
BcaC07g39112 Brassica carinata HOM05D001065 ORTHO05D002020 5.3e-28 128.6 132 53.0
PSO528G0199 Papaver somniferum HOM05D001065 ORTHO05D002020 5.3e-28 128.6 138 51.4
Nitab4.5_0000322g0040 Nicotiana tabacum HOM05D001065 ORTHO05D002020 9.0e-28 127.9 211 46.4
Aqoxy6G00265 Aquilegia oxysepala HOM05D001065 ORTHO05D002020 1.5e-27 127.1 157 47.1
SGA_v2.0_scaffold28G11985 Striga asiatica HOM05D001065 ORTHO05D002020 1.5e-27 127.1 224 47.3
Hma1.2p1_0542F.1_g174880 Hydrangea macrophylla HOM05D001065 ORTHO05D002020 2.0e-27 126.7 145 53.1
TWI34G1002 Tripterygium wilfordii HOM05D001065 ORTHO05D002020 2.6e-27 126.3 166 47.6
Migut.N03271 Erythranthe guttata HOM05D001065 ORTHO05D002020 3.4e-27 125.9 164 45.1
Sabra05G0136800 Salix brachista HOM05D001065 ORTHO05D002020 3.4e-27 125.9 143 49.0
SalBow2G1254 Salvia bowleyana HOM05D001065 ORTHO05D002020 3.4e-27 125.9 141 48.2
TWI60G0950 Tripterygium wilfordii HOM05D001065 ORTHO05D002020 3.4e-27 125.9 216 39.8
DCAR_003565 Daucus carota HOM05D001065 ORTHO05D002020 4.5e-27 125.6 198 43.9
Sabra02G0063100 Salix brachista HOM05D001065 ORTHO05D002020 1.3e-26 124.0 157 48.4
MSTRG.22404 Avicennia marina HOM05D001065 ORTHO05D002020 2.2e-26 123.2 171 42.1
Zm00001eb138850 Zea mays HOM05D001065 ORTHO05D002020 2.2e-26 123.2 129 47.3
C08p21010 Brassica napus HOM05D001065 ORTHO05D002020 2.9e-26 122.9 133 51.9
BolC8t49738H Brassica oleracea HOM05D001065 ORTHO05D002020 2.9e-26 122.9 133 51.9
Lj4C641G7 Lonicera japonica HOM05D001065 ORTHO05D002020 2.9e-26 122.9 131 55.0
CDE06G1933 Ceratophyllum demersum HOM05D001065 ORTHO05D002020 6.4e-26 121.7 144 46.5
ECA246G4266 Erigeron canadensis HOM05D001065 ORTHO05D002020 8.4e-26 121.3 124 50.0
Lj4A636G19 Lonicera japonica HOM05D001065 ORTHO05D002020 8.4e-26 121.3 131 54.2
Oeu040406.1 Olea europaea HOM05D001065 ORTHO05D002020 1.9e-25 120.2 143 45.5
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 2.4e-25 119.8 108 75.0
Cfa018563 Carpinus fangiana HOM05D001065 ORTHO05D002020 1.6e-24 117.1 208 44.2
EL10Ac1g00003 Beta vulgaris HOM05D001065 ORTHO05D002020 2.7e-24 116.3 143 46.2
Lj7C345G4 Lonicera japonica HOM05D001065 ORTHO05D002020 4.6e-24 115.5 138 47.1
Zm00001eb201260 Zea mays HOM05D001065 ORTHO05D002020 6.0e-24 115.2 134 50.7
CsaV3_UNG115960 Cucumis sativus L. HOM05D001065 ORTHO05D002020 7.9e-24 114.8 102 57.8
Os11g0183700 Oryza sativa ssp. japonica HOM05D001065 ORTHO05D002020 3.9e-23 112.5 134 49.3
BcaB03g12774 Brassica carinata HOM05D001065 ORTHO05D002020 6.7e-23 111.7 155 44.5
unitig_22.g6738 Utricularia gibba HOM05D001065 ORTHO05D002020 4.3e-22 109.0 131 46.6
AUR62043124 Chenopodium quinoa HOM05D001065 ORTHO05D002020 7.4e-22 108.2 121 52.1
Os12g0176700 Oryza sativa ssp. japonica HOM05D001065 ORTHO05D002020 1.3e-21 107.5 135 47.4
AUR62020263 Chenopodium quinoa HOM05D001065 ORTHO05D002020 2.1e-21 106.7 122 50.0
Rhsim06G0088100 Rhododendron simsii HOM05D001065 ORTHO05D002020 2.8e-21 106.3 216 38.0
unitig_8.g3348 Utricularia gibba HOM05D001065 ORTHO05D002020 1.8e-20 103.6 157 40.8
Oeu055291.1 Olea europaea HOM05D001065 ORTHO05D002020 1.2e-19 100.9 155 40.0
HPP92_009276 Vanilla planifolia HOM05D001065 ORTHO05D002020 1.5e-19 100.5 134 44.0
CAN.G1282.8 Capsicum annuum HOM05D001065 ORTHO05D002020 2.6e-19 99.8 119 48.7
AUR62023537 Chenopodium quinoa HOM05D001065 ORTHO05D002020 2.6e-19 99.8 116 50.9
Lj4A641T57 Lonicera japonica HOM05D001065 ORTHO05D002020 3.4e-19 99.4 115 52.2
ATR0994G009 Amborella trichopoda HOM05D001065 ORTHO05D002020 6.5e-18 95.1 139 41.0
GSVIVG01008831001 Vitis vinifera HOM05D001065 ORTHO05D002020 3.2e-17 92.8 84 57.1
Dinv27281 Davidia involucrata HOM05D001065 ORTHO05D002020 5.3e-12 75.5 50 66.0
MELO3C010503.2 Cucumis melo HOM05D001065 ORTHO05D002020 5.8e-11 72.0 40 75.0
CiPaw.15G034000 Carya illinoinensis HOM05D001065 ORTHO05D002020 2.2e-10 70.1 40 72.5
CDE08G0267 Ceratophyllum demersum HOM05D001065 ORTHO05D002020 2.2e-10 70.1 131 35.1
SEGI_34221 Sequoiadendron giganteum HOM05D001065 ORTHO05D002020 1.4e-09 67.4 127 37.0
SHI06333 Sapria himalayana HOM05D001065 ORTHO05D002020 9.3e-09 64.7 131 42.0
Dinv14648 Davidia involucrata HOM05D001065 ORTHO05D002020 4.6e-08 62.4 41 65.9
AagrBONN_evm.TU.Sc2ySwM_369.484 Anthoceros agrestis HOM05D001065 ORTHO05D002020 8.7e-07 58.2 163 30.1
arahy.Tifrunner.gnm1.ann1.JD5MXS Arachis hypogaea HOM05D036109 ORTHO05D002020 2.5e-06 56.6 81 45.7


User provided reference genes

Program Settings