Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.4e-131 473.0 252 100.0
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 7.8e-122 440.7 252 88.9
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.7e-108 396.4 255 84.3
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 3.6e-103 378.6 241 82.6
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 3.9e-97 358.6 255 79.6
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 6.0e-90 334.7 259 69.9
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 1.8e-86 323.2 250 69.6
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 9.0e-86 320.9 250 70.8
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 2.6e-85 319.3 250 69.6
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 4.9e-84 315.1 248 69.0
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 5.5e-83 311.6 250 67.6
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.6e-82 310.1 254 69.7
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.7e-82 309.3 251 69.7
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 4.6e-82 308.5 252 67.9
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 1.3e-81 307.0 261 72.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.8e-81 306.6 250 66.4
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.5e-80 303.5 222 72.1
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 5.7e-80 301.6 251 64.5
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 1.3e-79 300.4 250 66.4
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 3.7e-79 298.9 252 70.2
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 3.7e-79 298.9 251 69.7
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 8.2e-79 297.7 240 73.8
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.1e-78 297.4 245 70.2
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 3.1e-78 295.8 215 70.2
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 6.9e-78 294.7 252 64.3
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.5e-77 293.5 251 63.7
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 2.0e-77 293.1 251 63.3
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 5.9e-77 291.6 248 69.8
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 7.7e-77 291.2 263 62.4
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.9e-76 289.3 252 61.9
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 3.8e-76 288.9 261 61.7
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 8.5e-76 287.7 254 68.1
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.1e-75 287.3 267 59.2
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 5.5e-75 285.0 242 65.7
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.6e-74 282.3 244 66.0
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 4.6e-74 282.0 255 61.6
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 7.9e-74 281.2 237 62.9
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.0e-73 280.8 239 66.1
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.0e-73 280.8 304 58.9
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.8e-73 280.0 250 64.8
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 2.3e-73 279.6 232 67.2
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 3.9e-73 278.9 254 61.8
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.9e-73 278.9 219 66.2
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.1e-73 278.5 250 64.4
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.1e-72 277.3 255 61.2
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.5e-72 276.9 251 62.5
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 2.0e-72 276.6 261 59.4
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.5e-72 276.2 232 66.8
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 5.7e-72 275.0 271 59.0
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 7.4e-72 274.6 249 59.0
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.3e-71 273.9 232 65.9
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 6.3e-71 271.6 270 56.7
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 6.3e-71 271.6 209 70.8
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.4e-70 270.4 251 61.0
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 5.3e-70 268.5 251 59.0
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 9.1e-70 267.7 276 55.8
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 9.1e-70 267.7 220 67.3
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 9.1e-70 267.7 249 59.0
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 1.2e-69 267.3 249 59.0
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.5e-69 266.9 261 59.4
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-68 263.8 254 63.8
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.3e-68 263.8 261 59.8
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.3e-68 263.8 229 60.7
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.2e-68 263.1 223 67.3
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.2e-68 263.1 251 62.5
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 3.8e-68 262.3 222 65.8
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 8.5e-68 261.2 266 62.0
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 8.5e-68 261.2 254 62.6
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 8.5e-68 261.2 251 62.2
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.9e-67 260.0 277 60.6
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 1.9e-67 260.0 259 60.6
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 5.5e-67 258.5 243 62.6
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 7.2e-67 258.1 218 62.8
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.2e-66 257.3 220 62.7
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.2e-66 257.3 256 56.6
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 3.6e-66 255.8 190 71.6
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 3.6e-66 255.8 222 67.1
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 4.7e-66 255.4 243 60.9
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 6.1e-66 255.0 273 54.2
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 3.0e-65 252.7 241 61.4
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 6.7e-65 251.5 253 57.3
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 8.8e-65 251.1 280 54.3
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.1e-64 250.8 275 52.4
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 2.6e-64 249.6 259 60.2
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 5.7e-64 248.4 241 62.7
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.7e-63 246.9 255 55.7
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.7e-63 246.9 255 55.7
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 2.2e-63 246.5 180 74.4
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 1.1e-62 244.2 235 57.4
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.8e-62 243.4 237 59.9
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 4.1e-62 242.3 251 57.4
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.5e-61 240.4 226 59.3
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 4.5e-61 238.8 240 56.2
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.9e-60 236.1 249 59.0
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 6.5e-60 235.0 237 56.5
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 8.5e-60 234.6 181 70.2
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 5.5e-59 231.9 274 49.6
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 7.2e-59 231.5 224 58.5
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-58 230.7 274 49.3
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 1.2e-58 230.7 256 53.9
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.6e-58 230.3 260 51.5
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.6e-58 230.3 260 51.5
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 2.7e-58 229.6 275 49.1
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 4.7e-58 228.8 260 55.4
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 4.7e-58 228.8 269 55.4
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 5.2e-57 225.3 260 55.4
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 5.2e-57 225.3 259 54.8
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 2.0e-56 223.4 206 59.2
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 3.3e-56 222.6 181 66.9
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 5.7e-56 221.9 181 73.5
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 9.7e-56 221.1 206 59.2
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.8e-55 219.5 262 47.3
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 3.7e-55 219.2 272 53.7
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 6.3e-55 218.4 264 48.5
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.2e-53 214.2 201 54.2
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.0e-52 211.1 277 45.8
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.3e-52 210.7 199 60.8
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.5e-51 207.2 198 60.6
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 1.9e-51 206.8 232 53.0
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 4.2e-51 205.7 264 47.3
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 2.1e-50 203.4 215 55.3
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 2.6e-48 196.4 262 48.9
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.3e-47 194.1 214 53.3
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 1.7e-47 193.7 241 49.0
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 8.3e-47 191.4 167 68.9
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 7.0e-46 188.3 183 61.7
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.2e-45 187.6 209 54.5
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 3.5e-45 186.0 135 77.0
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.5e-43 180.6 184 57.6
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 1.9e-43 180.3 265 42.6
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.2e-43 179.5 178 53.9
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 4.2e-43 179.1 204 54.4
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.0e-40 170.2 179 53.6
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 9.8e-40 167.9 152 55.3
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.1e-38 164.5 116 66.4
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.4e-38 164.1 197 46.7
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.8e-38 163.7 149 70.5
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 7.0e-38 161.8 142 67.6
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 8.6e-36 154.8 203 45.8
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.0e-33 147.9 144 64.6
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.5e-32 144.1 133 65.4
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 2.2e-31 140.2 145 61.4
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.3e-31 138.7 108 63.0
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.4e-30 137.5 156 59.0
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 1.2e-29 134.4 260 41.5
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 1.2e-29 134.4 109 59.6
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.6e-29 134.0 163 44.2
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.5e-29 132.9 103 64.1
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 7.8e-29 131.7 157 49.0
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 7.8e-29 131.7 163 52.8
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.5e-27 126.7 144 63.9
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 4.0e-25 119.4 151 61.6
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 2.6e-24 116.7 184 40.8
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 3.4e-24 116.3 244 36.5
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 3.9e-20 102.8 60 71.7
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.1e-19 101.3 109 59.6
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 1.5e-19 100.9 96 49.0
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 2.5e-19 100.1 123 42.3
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.1e-18 97.1 105 59.0
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 8.0e-18 95.1 99 62.6
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 3.4e-16 89.7 135 51.9
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 7.1e-14 82.0 70 60.0
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 1.0e-12 78.2 108 39.8
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 2.3e-12 77.0 102 49.0
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.1e-11 74.7 57 59.6
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.5e-11 73.6 68 51.5
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 2.5e-11 73.6 81 49.4
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 5.6e-11 72.4 69 56.5
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.6e-10 70.9 70 52.9
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 2.6e-08 63.5 90 43.3
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 4.4e-08 62.8 90 42.2
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 7.6e-08 62.0 50 54.0
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-07 61.2 67 59.7
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-07 61.2 67 59.7
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 9.2e-06 55.1 66 37.9


User provided reference genes

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