Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 8.5e-54 213.4 106 100.0
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 6.2e-28 127.5 106 67.0
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 3.1e-27 125.2 104 69.2
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 2.6e-26 122.1 73 84.9
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 2.6e-26 122.1 73 84.9
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 2.6e-26 122.1 73 84.9
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 7.5e-26 120.6 73 83.6
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 1.7e-25 119.4 73 82.2
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 2.2e-25 119.0 73 83.6
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.9e-25 118.6 104 60.6
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 3.7e-25 118.2 73 80.8
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 6.4e-25 117.5 73 83.6
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 1.1e-24 116.7 73 80.8
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 1.1e-24 116.7 73 80.8
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 3.2e-24 115.2 73 79.5
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 7.0e-24 114.0 73 78.1
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 1.6e-23 112.8 97 60.8
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 3.5e-23 111.7 73 76.7
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 4.6e-23 111.3 73 75.3
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 6.0e-23 110.9 73 74.0
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 6.0e-23 110.9 101 58.4
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 7.8e-23 110.5 73 72.6
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.3e-22 109.8 114 57.0
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.3e-22 109.8 73 71.2
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.3e-22 109.8 73 75.3
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 2.3e-22 109.0 73 75.3
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.3e-22 109.0 73 69.9
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 3.0e-22 108.6 73 75.3
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 3.9e-22 108.2 73 72.6
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 3.9e-22 108.2 73 72.6
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 5.0e-22 107.8 73 75.3
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 6.6e-22 107.5 73 74.0
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 8.6e-22 107.1 73 74.0
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 8.6e-22 107.1 73 74.0
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 8.6e-22 107.1 73 74.0
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 8.6e-22 107.1 73 71.2
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 8.6e-22 107.1 73 71.2
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 8.6e-22 107.1 73 74.0
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 8.6e-22 107.1 73 69.9
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 1.1e-21 106.7 73 72.6
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 1.1e-21 106.7 105 57.1
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 1.1e-21 106.7 73 72.6
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 1.5e-21 106.3 73 68.5
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 1.5e-21 106.3 73 72.6
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 1.5e-21 106.3 73 71.2
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 2.5e-21 105.5 97 56.7
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.5e-21 105.5 73 69.9
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 2.5e-21 105.5 73 71.2
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 2.5e-21 105.5 73 72.6
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 3.3e-21 105.1 73 72.6
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 3.3e-21 105.1 73 67.1
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 3.3e-21 105.1 73 71.2
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 3.3e-21 105.1 73 69.9
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 3.3e-21 105.1 73 71.2
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 4.3e-21 104.8 73 72.6
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 4.3e-21 104.8 73 67.1
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 4.3e-21 104.8 73 71.2
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 4.3e-21 104.8 73 71.2
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 5.6e-21 104.4 73 69.9
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 5.6e-21 104.4 73 71.2
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 5.6e-21 104.4 73 69.9
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 5.6e-21 104.4 73 68.5
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 5.6e-21 104.4 73 71.2
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.6e-21 104.4 73 69.9
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 5.6e-21 104.4 73 71.2
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 5.6e-21 104.4 73 74.0
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 5.6e-21 104.4 73 71.2
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 9.5e-21 103.6 73 71.2
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 9.5e-21 103.6 73 65.8
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 9.5e-21 103.6 73 71.2
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 9.5e-21 103.6 73 69.9
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 9.5e-21 103.6 73 69.9
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 9.5e-21 103.6 73 69.9
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 9.5e-21 103.6 73 68.5
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 9.5e-21 103.6 73 68.5
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 9.5e-21 103.6 73 68.5
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.2e-20 103.2 73 69.9
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-20 102.8 73 69.9
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-20 102.8 73 68.5
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 1.6e-20 102.8 107 55.1
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.6e-20 102.8 73 72.6
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 1.6e-20 102.8 73 68.5
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 2.1e-20 102.4 73 69.9
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-20 102.4 73 69.9
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 2.1e-20 102.4 73 69.9
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 2.1e-20 102.4 73 68.5
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 2.1e-20 102.4 73 69.9
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.1e-20 102.4 73 68.5
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.1e-20 102.4 73 68.5
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 2.1e-20 102.4 73 68.5
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 2.1e-20 102.4 73 68.5
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.8e-20 102.1 73 67.1
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 2.8e-20 102.1 73 69.9
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 3.6e-20 101.7 73 69.9
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 3.6e-20 101.7 73 69.9
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 3.6e-20 101.7 73 67.1
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 4.7e-20 101.3 73 67.1
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 4.7e-20 101.3 73 67.1
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 6.2e-20 100.9 106 51.9
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 8.1e-20 100.5 73 68.5
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.1e-19 100.1 73 67.1
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.4e-19 99.8 73 68.5
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 1.8e-19 99.4 75 68.0
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.8e-19 99.4 76 67.1
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 3.1e-19 98.6 73 65.8
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 8.9e-19 97.1 95 54.7
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 8.9e-19 97.1 73 67.1
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.2e-18 96.7 73 64.4
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 4.4e-18 94.7 74 62.2
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 4.4e-18 94.7 98 53.1
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 4.4e-18 94.7 122 48.4
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 5.8e-18 94.4 74 62.2
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 9.8e-18 93.6 96 55.2
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 2.9e-17 92.0 73 64.4
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 2.9e-17 92.0 73 63.0
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 6.4e-17 90.9 73 63.0
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.4e-16 89.7 87 57.5
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.4e-16 89.0 74 59.5
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 4.1e-16 88.2 73 61.6
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 4.1e-16 88.2 73 61.6
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 4.1e-16 88.2 73 60.3
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.6e-15 86.3 60 68.3
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 2.7e-15 85.5 73 58.9
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 3.5e-15 85.1 74 58.1
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 3.5e-15 85.1 74 58.1
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.7e-14 82.8 67 61.2
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 5.1e-14 81.3 63 63.5
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 5.1e-14 81.3 63 63.5
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 5.1e-14 81.3 63 63.5
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 5.1e-14 81.3 63 63.5
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 6.6e-14 80.9 60 68.3
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-13 78.2 56 69.6
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-13 78.2 56 69.6
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-13 78.2 58 65.5
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 7.3e-13 77.4 59 64.4
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-12 76.6 56 67.9
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 1.2e-12 76.6 56 67.9
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 1.2e-12 76.6 78 48.7
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 2.1e-12 75.9 56 66.1
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 2.8e-12 75.5 60 55.0
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 3.6e-12 75.1 56 66.1
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 4.0e-11 71.6 56 64.3
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 2.0e-10 69.3 74 51.4
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 4.4e-10 68.2 97 42.3
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 9.9e-10 67.0 54 61.1
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 3.8e-09 65.1 46 69.6
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 3.8e-09 65.1 46 69.6
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 7.1e-08 60.8 50 58.0
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.0e-06 57.0 80 45.0
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.7e-06 56.2 50 56.0


User provided reference genes

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