Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.2e-56 223.0 120 100.0
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.2e-56 223.0 120 100.0
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 3.9e-39 164.9 120 79.2
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 7.4e-38 160.6 120 76.7
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 9.1e-36 153.7 126 74.6
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.1e-28 130.2 129 59.7
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 5.2e-23 111.3 113 61.1
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 9.7e-22 107.1 127 53.5
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 9.7e-22 107.1 143 54.5
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 2.2e-21 105.9 84 67.9
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 4.8e-21 104.8 118 56.8
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 6.3e-21 104.4 130 48.5
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 1.4e-20 103.2 127 53.5
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 5.3e-20 101.3 132 47.7
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.5e-19 98.6 125 50.4
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 5.9e-19 97.8 131 45.8
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 7.7e-19 97.4 137 44.5
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 7.7e-19 97.4 123 48.0
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 7.7e-19 97.4 134 47.0
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 7.7e-19 97.4 133 48.1
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.0e-18 97.1 140 45.7
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.2e-18 95.9 141 48.2
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 2.2e-18 95.9 123 51.2
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 2.9e-18 95.5 142 42.3
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.9e-18 95.5 126 47.6
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 2.9e-18 95.5 95 55.8
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.5e-18 94.4 124 46.8
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 6.5e-18 94.4 123 51.2
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 8.5e-18 94.0 121 46.3
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 1.9e-17 92.8 144 41.7
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 1.9e-17 92.8 144 41.7
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 1.9e-17 92.8 144 41.7
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.5e-17 92.4 145 41.4
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.5e-17 92.4 126 46.8
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.2e-17 92.0 97 52.6
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 4.2e-17 91.7 121 44.6
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 4.2e-17 91.7 116 46.6
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.2e-17 91.7 126 47.6
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 4.2e-17 91.7 136 43.4
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 5.5e-17 91.3 130 47.7
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 5.5e-17 91.3 135 45.9
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 7.2e-17 90.9 138 42.8
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 9.4e-17 90.5 127 44.1
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.2e-16 90.1 143 41.3
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.6e-16 89.7 144 41.0
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 1.6e-16 89.7 138 41.3
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.6e-16 89.7 136 44.1
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 1.6e-16 89.7 129 48.1
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-16 89.4 138 41.3
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 2.1e-16 89.4 138 41.3
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 2.1e-16 89.4 138 41.3
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 2.1e-16 89.4 137 45.3
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 2.7e-16 89.0 130 47.7
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 3.6e-16 88.6 86 54.7
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 3.6e-16 88.6 143 44.1
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 4.7e-16 88.2 94 52.1
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 4.7e-16 88.2 143 41.3
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 6.1e-16 87.8 88 58.0
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 6.1e-16 87.8 131 42.0
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 6.1e-16 87.8 127 45.7
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 6.1e-16 87.8 134 42.5
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 8.0e-16 87.4 130 46.9
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 8.0e-16 87.4 134 42.5
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 1.0e-15 87.0 138 40.6
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 1.0e-15 87.0 144 40.3
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 1.8e-15 86.3 77 61.0
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 2.3e-15 85.9 85 52.9
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.3e-15 85.9 93 49.5
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 2.3e-15 85.9 128 46.1
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 4.0e-15 85.1 136 42.6
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 6.8e-15 84.3 121 43.8
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 6.8e-15 84.3 88 53.4
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 6.8e-15 84.3 80 60.0
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 8.8e-15 84.0 134 41.0
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 1.2e-14 83.6 94 52.1
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.5e-14 83.2 142 43.7
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.5e-14 83.2 98 48.0
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 2.0e-14 82.8 132 43.2
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.0e-14 82.8 135 43.0
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 3.4e-14 82.0 80 56.2
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 3.4e-14 82.0 80 56.2
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 3.4e-14 82.0 96 46.9
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 4.4e-14 81.6 90 53.3
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 4.4e-14 81.6 129 41.1
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 4.4e-14 81.6 97 51.5
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 5.7e-14 81.3 138 40.6
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 5.7e-14 81.3 138 43.5
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 9.8e-14 80.5 98 48.0
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 1.3e-13 80.1 92 51.1
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.3e-13 80.1 95 51.6
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.3e-13 80.1 135 40.0
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 1.7e-13 79.7 91 50.5
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 2.2e-13 79.3 131 43.5
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 2.2e-13 79.3 99 45.5
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.2e-13 79.3 140 40.0
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.8e-13 79.0 129 44.2
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.8e-13 79.0 139 42.4
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 3.7e-13 78.6 71 60.6
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 3.7e-13 78.6 76 55.3
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 4.8e-13 78.2 144 41.7
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 4.8e-13 78.2 78 57.7
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 4.8e-13 78.2 77 61.0
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 4.8e-13 78.2 77 61.0
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 6.3e-13 77.8 149 38.3
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 6.3e-13 77.8 80 53.8
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 8.3e-13 77.4 130 38.5
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 8.3e-13 77.4 111 44.1
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.4e-12 76.6 69 62.3
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.8e-12 76.3 120 43.3
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.8e-12 76.3 121 45.5
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.8e-12 76.3 141 41.1
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 3.1e-12 75.5 77 54.5
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 5.4e-12 74.7 86 52.3
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 7.0e-12 74.3 116 47.4
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 1.2e-11 73.6 89 47.2
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 1.2e-11 73.6 70 52.9
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 2.0e-11 72.8 149 36.9
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.7e-11 72.4 99 45.5
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 2.7e-11 72.4 69 58.0
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 3.5e-11 72.0 135 40.7
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 5.9e-11 71.2 134 38.8
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 7.7e-11 70.9 64 62.5
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 7.7e-11 70.9 148 36.5
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 7.7e-11 70.9 83 49.4
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 7.7e-11 70.9 116 41.4
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 7.7e-11 70.9 71 56.3
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.3e-10 70.1 86 48.8
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.3e-10 70.1 133 39.8
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.3e-10 70.1 133 39.8
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.7e-10 69.7 73 53.4
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 1.7e-10 69.7 85 47.1
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.7e-10 69.7 117 45.3
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 2.3e-10 69.3 93 44.1
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.3e-10 69.3 104 41.3
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.9e-10 68.9 100 47.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 3.8e-10 68.6 123 40.7
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 3.8e-10 68.6 70 50.0
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 3.8e-10 68.6 99 46.5
SalBow8G0382 Salvia bowleyana HOM05D033521 ORTHO05D004171 3.8e-10 68.6 77 51.9
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 6.6e-10 67.8 92 50.0
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 8.6e-10 67.4 74 51.4
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.5e-09 66.6 116 39.7
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 1.5e-09 66.6 131 35.9
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.9e-09 66.2 75 50.7
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.9e-09 66.2 131 38.2
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 1.9e-09 66.2 95 47.4
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 2.5e-09 65.9 80 48.8
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 3.3e-09 65.5 70 51.4
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.2e-09 65.1 88 42.0
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 7.2e-09 64.3 108 38.9
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 7.2e-09 64.3 149 34.2
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 7.2e-09 64.3 86 47.7
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 9.5e-09 63.9 114 43.0
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 9.5e-09 63.9 81 49.4
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 1.2e-08 63.5 140 35.7
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 2.1e-08 62.8 90 41.1
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.8e-08 62.4 92 47.8
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.6e-08 62.0 94 46.8
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 3.6e-08 62.0 87 49.4
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 4.7e-08 61.6 111 39.6
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 4.7e-08 61.6 91 48.4
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 6.1e-08 61.2 77 46.8
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 8.0e-08 60.8 120 39.2
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.8e-07 59.7 80 43.8
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 3.0e-07 58.9 95 45.3
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 1.2e-06 57.0 73 47.9
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.5e-06 56.6 109 38.5
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.0e-06 56.2 63 55.6
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 3.4e-06 55.5 123 35.0
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 4.4e-06 55.1 115 37.4
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 9.8e-06 53.9 84 44.0


User provided reference genes

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