Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 7.8e-118 427.2 220 100.0
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 7.6e-105 384.0 220 90.9
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 6.2e-99 364.4 220 85.0
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 4.0e-98 361.7 220 84.5
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 4.2e-95 351.7 220 79.1
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 4.2e-95 351.7 220 80.9
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 9.3e-95 350.5 220 80.9
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 6.6e-93 344.4 217 81.1
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 1.1e-92 343.6 220 77.3
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 7.4e-92 340.9 220 76.8
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 9.6e-92 340.5 220 76.8
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 2.4e-90 335.9 217 79.7
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 3.4e-89 332.0 225 75.1
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.4e-87 326.6 225 73.3
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 1.6e-86 323.2 220 73.6
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 2.7e-86 322.4 220 72.3
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.8e-85 319.7 223 72.2
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 3.9e-85 318.5 222 71.2
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 5.1e-85 318.2 218 73.9
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.5e-84 316.6 223 70.9
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.5e-84 315.8 226 70.4
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 2.5e-84 315.8 215 73.0
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 5.6e-84 314.7 222 69.8
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 7.4e-84 314.3 223 71.3
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 7.4e-84 314.3 220 70.9
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.3e-83 313.5 218 71.1
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 1.3e-83 313.5 222 69.4
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.6e-83 313.2 218 71.6
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 2.1e-83 312.8 222 74.3
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 2.1e-83 312.8 215 71.6
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 2.8e-83 312.4 221 69.7
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 6.2e-83 311.2 215 71.6
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 6.2e-83 311.2 215 71.6
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 1.1e-82 310.5 219 69.9
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 1.1e-82 310.5 221 73.3
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.4e-82 310.1 218 69.3
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.4e-82 310.1 218 69.3
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 1.8e-82 309.7 218 67.9
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 1.8e-82 309.7 218 68.8
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.4e-82 309.3 218 69.3
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 3.1e-82 308.9 226 69.0
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 4.0e-82 308.5 216 71.3
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 4.0e-82 308.5 226 71.2
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 4.0e-82 308.5 218 70.2
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 1.5e-81 306.6 220 70.0
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 2.0e-81 306.2 220 70.9
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 2.6e-81 305.8 248 64.1
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 2.6e-81 305.8 213 71.8
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 3.4e-81 305.4 218 70.6
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 7.6e-81 304.3 227 66.1
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 7.6e-81 304.3 263 61.2
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 1.0e-80 303.9 218 67.4
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 1.0e-80 303.9 220 66.8
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.3e-80 303.5 220 68.2
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.3e-80 303.5 218 67.9
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.7e-80 303.1 215 67.4
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 2.2e-80 302.8 220 67.3
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 2.2e-80 302.8 220 69.1
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.9e-80 302.4 229 67.7
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 6.5e-80 301.2 224 66.1
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 3.2e-79 298.9 207 72.9
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 3.2e-79 298.9 220 70.5
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 3.2e-79 298.9 226 66.4
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 3.2e-79 298.9 216 68.5
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.2e-79 298.9 220 70.5
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 5.5e-79 298.1 221 67.0
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 9.3e-79 297.4 220 66.8
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 9.3e-79 297.4 220 68.2
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.6e-78 296.6 234 63.2
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 2.1e-78 296.2 220 68.6
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 2.7e-78 295.8 220 67.3
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 4.6e-78 295.0 220 69.1
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 6.0e-78 294.7 218 66.5
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 7.9e-78 294.3 219 66.2
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 1.0e-77 293.9 222 67.1
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 1.0e-77 293.9 227 66.5
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 3.9e-77 292.0 219 65.8
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 3.9e-77 292.0 219 65.8
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 3.9e-77 292.0 219 65.8
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 5.1e-77 291.6 218 67.9
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 6.7e-77 291.2 221 68.3
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.1e-76 290.4 218 65.6
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 1.1e-76 290.4 218 66.1
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 1.9e-76 289.7 218 64.7
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 2.5e-76 289.3 219 65.3
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 2.5e-76 289.3 219 65.3
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 7.4e-76 287.7 219 66.2
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 1.3e-75 287.0 219 64.8
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 1.6e-75 286.6 218 64.2
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 3.7e-75 285.4 222 68.5
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 4.8e-75 285.0 220 63.2
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 8.2e-75 284.3 245 62.4
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 1.1e-74 283.9 229 63.3
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 4.1e-74 282.0 217 65.0
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 2.0e-73 279.6 219 63.5
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.6e-73 279.3 225 63.1
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 4.5e-73 278.5 211 66.4
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 1.7e-72 276.6 219 63.5
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 5.0e-72 275.0 221 65.2
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 7.2e-71 271.2 221 64.3
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 9.3e-71 270.8 172 75.0
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 2.7e-70 269.2 216 63.4
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 2.7e-70 269.2 217 61.3
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 3.6e-70 268.9 259 57.5
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 6.1e-70 268.1 161 78.9
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 6.1e-70 268.1 212 65.6
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.0e-69 267.3 254 57.5
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 3.0e-69 265.8 211 63.0
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 3.0e-69 265.8 221 60.2
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.5e-68 263.5 186 69.4
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 4.3e-68 261.9 161 77.0
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 3.1e-66 255.8 216 59.7
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 5.5e-63 245.0 181 66.3
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.4e-58 230.3 220 57.7
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 2.6e-57 226.1 232 50.4
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 2.2e-56 223.0 130 76.9
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.9e-55 219.9 192 62.5
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 3.6e-54 215.7 116 85.3
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 1.4e-53 213.8 220 52.3
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 2.6e-52 209.5 123 78.0
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.2e-49 200.7 226 54.4
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 1.6e-49 200.3 241 48.5
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 4.2e-47 192.2 210 49.5
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 6.7e-45 184.9 251 41.4
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.1e-38 163.3 100 76.0
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.0e-36 156.8 173 51.4
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 7.5e-36 154.8 182 49.5
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 1.7e-35 153.7 251 36.7
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 2.7e-25 119.8 248 35.9
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.8e-13 80.5 43 83.7
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 8.3e-11 71.6 86 51.2
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.0e-09 67.0 38 76.3
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 7.8e-09 65.1 66 50.0
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.0e-08 64.7 43 67.4
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 5.6e-07 58.9 214 28.0
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 8.1e-06 55.1 26 96.2


User provided reference genes

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