Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.7e-162 575.9 281 100.0
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 3.9e-154 548.1 281 94.7
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 8.9e-151 537.0 278 93.2
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.1e-148 530.0 281 90.4
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.4e-148 529.6 281 89.7
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 4.6e-147 524.6 281 88.3
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 4.6e-147 524.6 281 87.9
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 4.3e-145 518.1 281 87.5
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 1.2e-142 510.0 289 85.8
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 2.5e-137 492.3 280 82.1
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 4.3e-137 491.5 250 94.0
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 7.3e-137 490.7 279 85.3
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 2.6e-134 482.3 280 81.4
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 4.5e-134 481.5 280 79.6
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 1.7e-133 479.6 280 80.0
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 2.2e-133 479.2 280 81.4
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 2.9e-133 478.8 280 80.7
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 4.9e-133 478.0 281 80.1
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 1.1e-132 476.9 280 80.4
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 1.1e-132 476.9 277 81.9
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 1.4e-132 476.5 280 79.6
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 1.4e-132 476.5 280 81.1
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 1.4e-132 476.5 279 79.6
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 2.4e-132 475.7 281 80.1
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 2.4e-132 475.7 281 79.0
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.2e-132 475.3 278 79.1
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.4e-132 474.6 278 79.5
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 5.4e-132 474.6 280 78.9
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.1e-131 472.6 277 79.1
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 2.7e-131 472.2 280 79.3
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 3.5e-131 471.9 281 79.4
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.3e-130 469.9 281 78.6
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 1.8e-130 469.5 281 79.0
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 1.8e-130 469.5 281 78.3
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 6.7e-130 467.6 280 78.2
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 8.7e-130 467.2 280 79.3
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 1.1e-129 466.8 277 79.1
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.9e-129 466.1 281 79.0
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 1.9e-129 466.1 277 76.9
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 3.3e-129 465.3 280 78.9
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 4.3e-129 464.9 281 75.8
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.3e-128 463.4 280 77.5
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 1.3e-128 463.4 280 78.9
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 1.6e-128 463.0 280 78.6
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.1e-128 462.6 266 85.0
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 3.6e-128 461.8 280 77.1
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 3.6e-128 461.8 280 79.3
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 1.1e-127 460.3 278 78.4
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 2.4e-127 459.1 278 78.4
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 4.0e-127 458.4 280 77.5
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 5.3e-127 458.0 278 78.8
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 6.9e-127 457.6 279 75.3
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 2.0e-126 456.1 281 77.9
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 3.4e-126 455.3 281 76.9
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 5.8e-126 454.5 281 76.5
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 9.9e-126 453.8 283 77.4
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 1.7e-125 453.0 281 75.1
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 2.2e-125 452.6 280 76.4
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 2.2e-125 452.6 278 74.1
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 2.2e-125 452.6 276 78.6
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 1.4e-124 449.9 284 77.1
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 3.2e-124 448.7 280 76.4
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 5.5e-124 448.0 277 74.7
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 5.5e-124 448.0 277 74.7
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 5.5e-124 448.0 277 74.4
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 7.1e-124 447.6 277 74.0
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 9.3e-124 447.2 278 74.5
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 1.2e-123 446.8 269 79.2
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 1.6e-123 446.4 310 70.6
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 1.6e-123 446.4 267 79.4
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 2.7e-123 445.7 277 73.6
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 2.7e-123 445.7 277 73.6
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.0e-122 443.7 281 76.9
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.3e-122 443.4 278 73.0
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 2.3e-122 442.6 280 74.6
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 3.0e-122 442.2 279 74.6
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 8.7e-122 440.7 277 73.3
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 8.7e-122 440.7 278 71.9
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.5e-121 439.9 277 72.9
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.9e-121 439.5 309 68.9
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 1.6e-120 436.4 279 74.9
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 1.6e-120 436.4 281 73.0
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 8.2e-120 434.1 278 71.9
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 2.4e-119 432.6 281 74.4
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 5.3e-119 431.4 285 70.5
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 6.9e-119 431.0 267 77.2
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 5.8e-118 427.9 294 70.7
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 3.2e-116 422.2 265 76.2
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 9.3e-116 420.6 280 72.5
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 9.3e-116 420.6 280 72.5
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 1.2e-115 420.2 280 70.4
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 3.5e-115 418.7 266 74.4
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.3e-114 416.8 280 68.6
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.8e-114 416.4 267 73.0
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 8.2e-112 407.5 251 76.9
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.7e-109 399.8 277 66.8
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 3.8e-109 398.7 277 66.1
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 1.1e-108 397.1 281 69.0
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 2.5e-108 396.0 251 71.7
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 2.5e-108 396.0 251 71.3
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 7.9e-107 391.0 265 67.5
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 7.9e-107 391.0 236 78.4
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 5.7e-105 384.8 266 69.2
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 1.1e-97 360.5 248 67.3
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 8.2e-96 354.4 270 61.5
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 6.9e-95 351.3 190 84.2
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 3.8e-93 345.5 422 45.7
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 3.9e-90 335.5 268 56.3
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 7.7e-86 321.2 269 60.2
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.3e-85 320.5 415 44.1
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 2.2e-85 319.7 282 54.3
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 2.6e-81 306.2 267 55.4
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 1.6e-78 297.0 274 51.5
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 1.7e-77 293.5 167 79.0
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.1e-76 290.8 167 78.4
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 2.5e-76 289.7 176 75.0
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 8.8e-74 281.2 180 67.8
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 2.2e-72 276.6 306 48.4
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 3.7e-72 275.8 144 84.0
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 8.6e-69 264.6 295 46.4
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 4.1e-63 245.7 156 74.4
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 8.6e-61 238.0 249 50.6
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 3.6e-59 232.6 290 43.1
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.9e-56 223.0 135 77.8
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 6.0e-54 215.3 144 62.5
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.1e-52 211.1 248 48.0
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 2.5e-52 209.9 140 72.9
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 3.2e-47 193.0 156 62.2
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 1.5e-41 174.1 240 37.5
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 2.4e-31 140.2 110 59.1
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 1.2e-30 137.9 77 80.5
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 5.6e-28 129.0 71 77.5
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 3.1e-26 123.2 72 72.2
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 3.1e-26 123.2 72 72.2
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 6.4e-24 115.5 92 63.0
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 2.4e-23 113.6 80 66.2
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.2e-23 112.8 75 70.7
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.2e-23 112.8 76 69.7
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 4.6e-22 109.4 77 70.1
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 9.3e-15 85.1 96 49.0
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 3.0e-13 80.1 85 51.8
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 5.1e-13 79.3 55 69.1
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 2.4e-07 60.5 126 31.0
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 9.3e-07 58.5 87 42.5
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 3.5e-06 56.6 50 58.0


User provided reference genes

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