Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G215100 Glycine max HOM05D005611 ORTHO05D006852 1.5e-74 282.7 139 100.0
Glyma.08G122300 Glycine max HOM05D005611 ORTHO05D006852 1.1e-16 90.5 49 83.7
VMungo0251G3798 Vigna mungo HOM05D005611 ORTHO05D006852 2.4e-16 89.4 49 81.6
Ca_17866_v3 Cicer arietinum L. HOM05D005611 ORTHO05D006852 7.8e-15 84.3 49 73.5
Phvul.002G245100 Phaseolus vulgaris HOM05D005611 ORTHO05D006852 1.0e-14 84.0 49 75.5
Ciclev10016585m.g Citrus clementina HOM05D005611 ORTHO05D006852 1.7e-14 83.2 49 69.4
unitig_748.g7816 Utricularia gibba HOM05D005611 ORTHO05D006852 2.3e-14 82.8 50 70.0
GSVIVG01021385001 Vitis vinifera HOM05D005611 ORTHO05D006852 5.1e-14 81.6 49 69.4
Medtr8g088110 Medicago truncatula HOM05D005611 ORTHO05D006852 1.1e-13 80.5 49 69.4
Lj2C311T13 Lonicera japonica HOM05D005611 ORTHO05D006852 1.9e-13 79.7 49 67.3
Oeu046858.1 Olea europaea HOM05D005611 ORTHO05D006852 1.9e-13 79.7 49 69.4
Oeu046859.1 Olea europaea HOM05D005611 ORTHO05D006852 1.9e-13 79.7 49 69.4
TPR.G6740 Trifolium pratense HOM05D005611 ORTHO05D006852 2.5e-13 79.3 49 67.3
TAR624G0035 Trochodendron aralioides HOM05D005611 ORTHO05D006852 2.5e-13 79.3 49 63.3
Atru.chr10.1382 Acer truncatum HOM05D005611 ORTHO05D006852 3.3e-13 79.0 49 67.3
Dinv30686 Davidia involucrata HOM05D005611 ORTHO05D006852 3.3e-13 79.0 49 67.3
ECA236G0867 Erigeron canadensis HOM05D005611 ORTHO05D006852 3.3e-13 79.0 49 67.3
Lalb_Chr12g0204731 Lupinus albus HOM05D005611 ORTHO05D006852 3.3e-13 79.0 49 69.4
TWI53G0745 Tripterygium wilfordii HOM05D005611 ORTHO05D006852 3.3e-13 79.0 49 65.3
Migut.M00955 Erythranthe guttata HOM05D005611 ORTHO05D006852 4.3e-13 78.6 49 67.3
Lj1A1182G78 Lonicera japonica HOM05D005611 ORTHO05D006852 4.3e-13 78.6 49 67.3
Sed0013902 Sechium edule HOM05D005611 ORTHO05D006852 4.3e-13 78.6 49 67.3
Aqoxy4G00132 Aquilegia oxysepala HOM05D005611 ORTHO05D006852 5.6e-13 78.2 49 65.3
Lj4g0008837 Lotus japonicus HOM05D005611 ORTHO05D006852 5.6e-13 78.2 49 65.3
MBI07_g07809_MAGBIO Magnolia biondii HOM05D005611 ORTHO05D006852 5.6e-13 78.2 49 65.3
Zm00001eb296080 Zea mays HOM05D005611 ORTHO05D006852 5.6e-13 78.2 49 63.3
Aqoxy181s006 Aquilegia oxysepala HOM05D005611 ORTHO05D006852 9.6e-13 77.4 49 65.3
MELO3C002708.2 Cucumis melo HOM05D005611 ORTHO05D006852 9.6e-13 77.4 49 65.3
CsaV3_1G032740 Cucumis sativus L. HOM05D005611 ORTHO05D006852 9.6e-13 77.4 49 65.3
Dinv32296 Davidia involucrata HOM05D001132 ORTHO05D002510 9.6e-13 77.4 49 67.3
Psat7g065640 Pisum sativum HOM05D005611 ORTHO05D006852 9.6e-13 77.4 49 65.3
Potri.001G353500 Populus trichocarpa HOM05D005611 ORTHO05D006852 1.3e-12 77.0 49 67.3
SGA_v2.0_scaffold333G49020 Striga asiatica HOM05D005611 ORTHO05D006852 1.3e-12 77.0 93 45.2
ClCG03G007160 Citrullus lanatus HOM05D005611 ORTHO05D006852 1.6e-12 76.6 49 63.3
HanXRQChr04g0118451 Helianthus annuus HOM05D005611 ORTHO05D006852 1.6e-12 76.6 49 65.3
Oeu046860.1 Olea europaea HOM05D005611 ORTHO05D006852 1.6e-12 76.6 49 67.3
Cfa001000 Carpinus fangiana HOM05D005611 ORTHO05D006852 2.1e-12 76.3 49 65.3
QL05p060310 Quercus lobata HOM05D005611 ORTHO05D006852 2.1e-12 76.3 49 67.3
THA.LOC104820615 Tarenaya hassleriana HOM05D005611 ORTHO05D006852 2.1e-12 76.3 49 63.3
Cc09_g09540 Coffea canephora HOM05D005611 ORTHO05D006852 2.8e-12 75.9 49 67.3
MD10G1267000 Malus domestica HOM05D005611 ORTHO05D006852 2.8e-12 75.9 49 65.3
Peaxi162Scf00121g02310 Petunia axillaris HOM05D005611 ORTHO05D006852 2.8e-12 75.9 49 63.3
MSTRG.7457 Avicennia marina HOM05D005611 ORTHO05D006852 3.6e-12 75.5 49 61.2
THA.LOC104814269 Tarenaya hassleriana HOM05D005611 ORTHO05D006852 3.6e-12 75.5 49 59.2
Thecc.06G157200 Theobroma cacao HOM05D005611 ORTHO05D006852 3.6e-12 75.5 49 61.2
Eucgr.E02358 Eucalyptus grandis HOM05D005611 ORTHO05D006852 4.8e-12 75.1 49 63.3
FAN21G3694 Fragaria x ananassa HOM05D005611 ORTHO05D006852 4.8e-12 75.1 49 63.3
MD05G1291300 Malus domestica HOM05D005611 ORTHO05D006852 4.8e-12 75.1 49 63.3
Prupe.4G074300 Prunus persica HOM05D005611 ORTHO05D006852 4.8e-12 75.1 49 63.3
RcHm_v2.0_Chr5g0012971 Rosa chinensis HOM05D005611 ORTHO05D006852 4.8e-12 75.1 49 63.3
HPP92_023428 Vanilla planifolia HOM05D005611 ORTHO05D006852 4.8e-12 75.1 49 63.3
Zm00001eb345990 Zea mays HOM05D005611 ORTHO05D006852 4.8e-12 75.1 49 61.2
arahy.Tifrunner.gnm1.ann1.92TPPG Arachis hypogaea HOM05D005611 ORTHO05D006852 6.2e-12 74.7 49 63.3
arahy.Tifrunner.gnm1.ann1.QUL4C1 Arachis hypogaea HOM05D005611 ORTHO05D006852 6.2e-12 74.7 49 63.3
EL10Ac8g19785 Beta vulgaris HOM05D005611 ORTHO05D006852 8.1e-12 74.3 48 60.4
Sc17g0005210 Simmondsia chinensis HOM05D005611 ORTHO05D006852 8.1e-12 74.3 48 62.5
Zm00001eb109920 Zea mays HOM05D005611 ORTHO05D006852 8.1e-12 74.3 49 59.2
Zm00001eb381680 Zea mays HOM05D005611 ORTHO05D006852 8.1e-12 74.3 49 59.2
Zm00001eb381730 Zea mays HOM05D005611 ORTHO05D006852 8.1e-12 74.3 49 59.2
Zm00001eb383190 Zea mays HOM05D005611 ORTHO05D006852 8.1e-12 74.3 112 38.4
Actinidia39548 Actinidia chinensis HOM05D005611 ORTHO05D006852 1.1e-11 73.9 49 61.2
CDE02G3176 Ceratophyllum demersum HOM05D005611 ORTHO05D006852 1.1e-11 73.9 50 62.0
COL.COLO4_22791 Corchorus olitorius HOM05D005611 ORTHO05D006852 1.1e-11 73.9 49 61.2
Haze_05507 Corylus avellana HOM05D005611 ORTHO05D006852 1.1e-11 73.9 49 63.3
Haze_05513 Corylus avellana HOM05D005611 ORTHO05D006852 1.1e-11 73.9 49 63.3
FAN25G0508 Fragaria x ananassa HOM05D005611 ORTHO05D006852 1.4e-11 73.6 49 61.2
Hma1.2p1_0015F.1_g010330 Hydrangea macrophylla HOM05D005611 ORTHO05D006852 1.4e-11 73.6 49 61.2
FvH4_3g06340 Fragaria vesca HOM05D005611 ORTHO05D006852 1.8e-11 73.2 49 61.2
FAN11G0643 Fragaria x ananassa HOM05D005611 ORTHO05D006852 1.8e-11 73.2 49 61.2
MD13G1187800 Malus domestica HOM05D005611 ORTHO05D006852 1.8e-11 73.2 52 57.7
Sc05g0006570 Simmondsia chinensis HOM05D005611 ORTHO05D006852 1.8e-11 73.2 48 62.5
Duzib160G0255 Durio zibethinus HOM05D005611 ORTHO05D006852 2.4e-11 72.8 49 57.1
Manes.15G117500 Manihot esculenta HOM05D005611 ORTHO05D006852 2.4e-11 72.8 49 63.3
Os05g0566800 Oryza sativa ssp. japonica HOM05D005611 ORTHO05D006852 2.4e-11 72.8 130 36.2
PSO210G0511 Papaver somniferum HOM05D005611 ORTHO05D006852 2.4e-11 72.8 48 60.4
Solyc02g071210.3 Solanum lycopersicum HOM05D005611 ORTHO05D006852 3.1e-11 72.4 49 63.3
Sopen02g020290 Solanum pennellii HOM05D005611 ORTHO05D006852 3.1e-11 72.4 49 63.3
PGSC0003DMG400003083 Solanum tuberosum HOM05D005611 ORTHO05D006852 3.1e-11 72.4 49 63.3
DCAR_031455 Daucus carota HOM05D005611 ORTHO05D006852 4.0e-11 72.0 47 59.6
AT1G29390 Arabidopsis thaliana HOM05D005611 ORTHO05D006852 6.9e-11 71.2 49 61.2
CAN.G257.44 Capsicum annuum HOM05D005611 ORTHO05D006852 6.9e-11 71.2 49 61.2
CDE02G0736 Ceratophyllum demersum HOM05D005611 ORTHO05D006852 6.9e-11 71.2 48 60.4
PGR042G0213 Punica granatum HOM05D005611 ORTHO05D006852 6.9e-11 71.2 49 55.1
AL1G43180 Arabidopsis lyrata HOM05D005611 ORTHO05D006852 9.0e-11 70.9 49 59.2
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 1.2e-10 70.5 71 54.9
Nitab4.5_0008782g0020 Nicotiana tabacum HOM05D005611 ORTHO05D006852 1.2e-10 70.5 49 61.2
PSO170G6905 Papaver somniferum HOM05D005611 ORTHO05D006852 1.2e-10 70.5 48 58.3
Aa31LG6G6160 Aethionema arabicum HOM05D005611 ORTHO05D006852 1.5e-10 70.1 49 57.1
CDE09G1387 Ceratophyllum demersum HOM05D000478 ORTHO05D000345 1.5e-10 70.1 48 58.3
Duzib235G0740 Durio zibethinus HOM05D005611 ORTHO05D006852 1.5e-10 70.1 49 57.1
Nitab4.5_0010964g0070 Nicotiana tabacum HOM05D005611 ORTHO05D006852 1.5e-10 70.1 49 61.2
Gohir.A09G078500 Gossypium hirsutum HOM05D005611 ORTHO05D006852 2.0e-10 69.7 49 53.1
Gohir.D09G079000 Gossypium hirsutum HOM05D005611 ORTHO05D006852 2.0e-10 69.7 49 53.1
Gorai.006G094000 Gossypium raimondii HOM05D005611 ORTHO05D006852 2.0e-10 69.7 49 53.1
Lsat_1_v5_gn_7_30901 Lactuca sativa HOM05D005611 ORTHO05D006852 2.0e-10 69.7 49 63.3
CANSAT35G0727 Cannabis sativa HOM05D005611 ORTHO05D006852 2.6e-10 69.3 48 56.2
Carub.0001s2760 Capsella rubella HOM05D005611 ORTHO05D006852 5.8e-10 68.2 49 57.1
AL1G43190 Arabidopsis lyrata HOM05D005611 ORTHO05D006852 7.6e-10 67.8 49 57.1
CARHR028720 Cardamine hirsuta HOM05D005611 ORTHO05D006852 9.9e-10 67.4 49 57.1
C05p28160 Brassica napus HOM05D005611 ORTHO05D006852 1.3e-09 67.0 49 55.1
AT1G29395 Arabidopsis thaliana HOM05D005611 ORTHO05D006852 1.7e-09 66.6 49 57.1
AUR62035793 Chenopodium quinoa HOM05D005611 ORTHO05D006852 1.7e-09 66.6 48 54.2
Thhalv10008700m.g Eutrema salsugineum HOM05D005611 ORTHO05D006852 1.7e-09 66.6 49 57.1
BcaC05g26964 Brassica carinata HOM05D005611 ORTHO05D006852 2.9e-09 65.9 49 55.1
BolC5t31543H Brassica oleracea HOM05D005611 ORTHO05D006852 2.9e-09 65.9 49 55.1
A09p36920 Brassica napus HOM05D005611 ORTHO05D006852 3.8e-09 65.5 49 55.1
BraA09t39211Z Brassica rapa HOM05D005611 ORTHO05D006852 3.8e-09 65.5 49 55.1
BcaB07g32532 Brassica carinata HOM05D005611 ORTHO05D006852 4.9e-09 65.1 49 55.1
AUR62027563 Chenopodium quinoa HOM05D005611 ORTHO05D006852 4.9e-09 65.1 48 52.1
Sp1g25330 Schrenkiella parvula HOM05D005611 ORTHO05D006852 4.9e-09 65.1 49 55.1
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 4.9e-09 65.1 36 83.3
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 6.4e-09 64.7 36 86.1
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 8.4e-09 64.3 70 51.4
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 1.9e-08 63.2 70 50.0
FAN16G2612 Fragaria x ananassa HOM05D005611 ORTHO05D006852 1.9e-08 63.2 69 44.9
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 3.2e-08 62.4 70 50.0
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 4.2e-08 62.0 56 57.1
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 4.2e-08 62.0 63 49.2
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 4.2e-08 62.0 56 57.1
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 5.4e-08 61.6 38 76.3
SEGI_26979 Sequoiadendron giganteum HOM05D005611 ORTHO05D006852 5.4e-08 61.6 49 53.1
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 7.1e-08 61.2 36 77.8
PSO724G0556 Papaver somniferum HOM05D005611 ORTHO05D006852 9.3e-08 60.8 50 48.0
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 1.2e-07 60.5 35 80.0
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 1.2e-07 60.5 35 80.0
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 1.6e-07 60.1 36 75.0
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 1.6e-07 60.1 68 48.5
SMO146G0255 Selaginella moellendorffii HOM05D005611 ORTHO05D006852 1.6e-07 60.1 48 50.0
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 2.1e-07 59.7 36 75.0
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 2.1e-07 59.7 36 75.0
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 2.1e-07 59.7 46 67.4
PSO017G1200 Papaver somniferum HOM05D005611 ORTHO05D006852 2.1e-07 59.7 50 46.0
PSO729G0211 Papaver somniferum HOM05D005611 ORTHO05D006852 2.1e-07 59.7 50 46.0
Mapoly0183s0020 Marchantia polymorpha HOM05D005611 ORTHO05D006852 2.7e-07 59.3 51 41.2
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 2.7e-07 59.3 104 35.6
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 3.5e-07 58.9 57 49.1
PSO724G0719 Papaver somniferum HOM05D005611 ORTHO05D006852 3.5e-07 58.9 50 46.0
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 3.5e-07 58.9 72 47.2
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 6.0e-07 58.2 66 50.0
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 7.9e-07 57.8 36 72.2
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 7.9e-07 57.8 36 75.0
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 7.9e-07 57.8 61 45.9
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 1.0e-06 57.4 36 72.2
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 1.0e-06 57.4 36 77.8
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 1.0e-06 57.4 64 50.0
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 1.0e-06 57.4 34 76.5
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 1.3e-06 57.0 64 50.0
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 1.3e-06 57.0 68 47.1
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 1.7e-06 56.6 64 50.0
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 1.7e-06 56.6 64 50.0
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 1.7e-06 56.6 38 73.7
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 1.7e-06 56.6 36 72.2
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 2.3e-06 56.2 112 38.4
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 2.3e-06 56.2 34 79.4
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 3.0e-06 55.8 35 74.3
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 3.9e-06 55.5 64 48.4
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 3.9e-06 55.5 64 48.4
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 3.9e-06 55.5 36 72.2
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 3.9e-06 55.5 62 46.8
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 3.9e-06 55.5 35 71.4
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 3.9e-06 55.5 36 72.2
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 3.9e-06 55.5 36 75.0
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 3.9e-06 55.5 36 75.0
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 3.9e-06 55.5 36 75.0
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 3.9e-06 55.5 35 77.1
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 5.1e-06 55.1 62 46.8
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 5.1e-06 55.1 69 46.4
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 5.1e-06 55.1 63 44.4
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 6.6e-06 54.7 36 72.2
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 6.6e-06 54.7 60 50.0
PSO017G2460 Papaver somniferum HOM05D005611 ORTHO05D006852 6.6e-06 54.7 43 48.8
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 8.7e-06 54.3 60 46.7
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 8.7e-06 54.3 36 69.4
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 8.7e-06 54.3 36 69.4
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.7e-06 54.3 36 72.2
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.7e-06 54.3 36 72.2
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.7e-06 54.3 36 72.2


User provided reference genes

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