Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 4.5e-95 351.3 181 100.0
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 2.8e-89 332.0 182 95.6
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 3.2e-85 318.5 181 88.4
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 3.9e-83 311.6 194 79.4
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 6.7e-59 231.1 197 63.5
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 2.7e-55 219.2 202 63.4
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 3.5e-55 218.8 186 60.8
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 4.5e-55 218.4 182 67.6
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 4.2e-53 211.8 193 63.7
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 1.2e-52 210.3 229 53.3
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 2.1e-52 209.5 200 62.0
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 2.7e-52 209.1 194 59.3
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 1.0e-51 207.2 213 62.0
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 1.4e-51 206.8 200 62.0
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 5.2e-51 204.9 178 62.4
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 5.2e-51 204.9 178 62.4
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 6.8e-51 204.5 178 62.4
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 2.0e-50 203.0 208 56.2
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 3.4e-50 202.2 193 62.7
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 3.4e-50 202.2 169 67.5
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 6.3e-49 198.0 208 56.2
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 6.3e-49 198.0 181 57.5
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 2.4e-48 196.1 193 58.0
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 9.1e-48 194.1 212 59.4
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 9.1e-48 194.1 178 57.9
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 1.2e-47 193.7 200 59.5
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 3.5e-47 192.2 206 59.2
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 3.5e-47 192.2 192 61.5
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 4.5e-47 191.8 185 56.2
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 5.9e-47 191.4 193 55.4
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 7.7e-47 191.0 195 54.4
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 1.0e-46 190.7 189 56.1
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 1.3e-46 190.3 196 57.1
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 1.3e-46 190.3 195 58.5
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 1.7e-46 189.9 195 53.8
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 1.7e-46 189.9 204 52.9
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 8.6e-46 187.6 178 56.7
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 8.6e-46 187.6 197 57.9
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 1.5e-45 186.8 174 63.2
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 1.9e-45 186.4 190 61.1
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 6.1e-44 181.4 178 55.6
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 6.1e-44 181.4 168 59.5
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 8.0e-44 181.0 192 52.6
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.0e-43 180.6 175 60.0
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 1.0e-43 180.6 185 54.1
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 1.4e-43 180.3 189 58.2
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.3e-43 179.5 174 58.0
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 4.0e-43 178.7 165 58.2
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 8.9e-43 177.6 199 53.8
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 1.5e-42 176.8 163 63.2
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 2.6e-42 176.0 119 71.4
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 5.7e-42 174.9 176 58.0
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 2.2e-41 172.9 183 55.7
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 3.7e-41 172.2 164 54.9
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 4.9e-41 171.8 169 53.8
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 4.9e-41 171.8 181 51.9
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 1.8e-40 169.9 170 55.3
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 1.8e-40 169.9 167 56.3
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 1.8e-40 169.9 185 53.5
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 2.4e-40 169.5 177 54.8
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 2.4e-40 169.5 169 55.6
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 4.1e-40 168.7 175 54.9
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 4.1e-40 168.7 121 72.7
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 5.4e-40 168.3 166 56.6
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 1.6e-39 166.8 169 55.0
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 2.7e-39 166.0 97 78.4
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 4.5e-39 165.2 179 52.5
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 5.9e-39 164.9 180 53.3
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 7.8e-39 164.5 144 56.2
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 1.0e-38 164.1 177 52.5
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 1.0e-38 164.1 179 52.5
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 1.3e-38 163.7 165 58.8
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 2.9e-38 162.5 165 59.4
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 3.9e-38 162.2 180 52.8
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 6.6e-38 161.4 168 53.0
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 1.9e-37 159.8 169 58.6
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 4.3e-37 158.7 136 61.8
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 5.6e-37 158.3 176 51.1
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 9.5e-37 157.5 176 51.7
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 1.2e-36 157.1 113 66.4
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 1.2e-36 157.1 113 66.4
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 3.6e-36 155.6 163 52.8
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.0e-35 154.1 163 52.1
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.3e-35 152.9 163 50.9
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 4.0e-35 152.1 127 63.8
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 1.5e-34 150.2 97 71.1
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 3.4e-34 149.1 130 59.2
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 3.4e-34 149.1 138 56.5
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 5.8e-34 148.3 162 51.2
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 7.5e-34 147.9 107 72.9
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 1.3e-33 147.1 111 60.4
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 4.9e-33 145.2 143 55.2
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 3.0e-30 136.0 186 40.9
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 1.5e-29 133.7 141 52.5
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.9e-29 133.3 81 71.6
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 1.6e-28 130.2 78 74.4
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 4.4e-26 122.1 124 54.0
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.9e-25 119.4 122 51.6
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 3.7e-25 119.0 163 42.3
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 8.3e-25 117.9 79 63.3
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 1.9e-24 116.7 132 53.0
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 9.2e-24 114.4 109 53.2
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 1.7e-22 110.2 78 62.8
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 8.6e-22 107.8 197 42.1
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.1e-21 107.5 120 45.8
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 4.3e-21 105.5 121 52.1
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.2e-20 104.0 125 43.2
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 4.0e-19 99.0 81 70.4
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 5.8e-18 95.1 74 64.9
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 1.7e-17 93.6 104 46.2
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 8.6e-14 81.3 111 46.8
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 1.4e-11 73.9 116 41.4
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 3.1e-11 72.8 115 40.9
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 2.9e-09 66.2 55 54.5


User provided reference genes

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