Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 3920.2 1979 100.0
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 3678.3 1980 94.3
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 3288.4 1982 84.3
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 3257.2 1982 84.0
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 3015.7 1988 78.1
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 3014.2 1990 77.9
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 3001.8 1985 77.7
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 2995.3 1978 77.8
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 2957.5 1988 77.3
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 2821.2 1983 73.6
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 2786.5 1981 73.0
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 2492.2 1765 73.0
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2122.1 2009 57.5
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2092.0 2040 56.1
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2044.6 2010 56.2
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2038.5 2011 55.2
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2029.6 1994 55.3
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2019.6 1985 56.0
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2018.0 2017 55.3
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2015.7 2004 55.6
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2006.1 1997 55.4
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1986.5 2002 55.2
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1981.5 2009 53.0
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1976.4 1999 54.4
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1972.6 2028 53.7
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1969.1 2018 54.4
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1964.5 2028 54.3
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1959.5 2004 53.7
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1950.3 1999 52.9
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1942.5 2014 52.8
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1939.1 2046 53.0
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1932.9 2036 53.1
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1931.4 2001 53.1
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1922.9 2028 53.2
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1919.1 2019 53.7
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1915.6 1999 53.1
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1913.3 2021 53.3
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1905.2 2035 52.0
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1903.6 2003 51.9
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1872.8 2020 51.4
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1844.3 2030 51.7
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1808.9 2011 50.5
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1804.6 2041 50.5
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1767.7 2016 50.4
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1757.3 2031 49.2
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1745.3 2042 49.7
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1738.0 2022 49.4
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1729.5 2018 48.9
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1728.4 2015 49.4
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1720.3 2017 48.6
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1686.8 2052 47.9
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1644.8 1942 48.6
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1640.6 2004 47.6
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1636.3 2004 47.5
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1628.2 2024 46.9
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1625.5 2015 47.0
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1625.5 2000 47.0
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1622.4 2018 46.7
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1620.9 2025 46.9
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1610.5 1998 46.3
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1608.2 2033 46.2
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1602.0 2036 46.1
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1602.0 2029 46.4
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1595.5 2013 46.3
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1594.7 1998 46.8
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1594.7 2004 46.7
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1593.2 2006 46.2
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1593.2 2019 47.2
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1591.2 1976 47.6
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1580.1 1939 47.2
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1578.9 2014 46.6
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1569.7 2017 45.8
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1567.7 2086 44.4
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1560.8 1722 51.2
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1560.0 1716 50.9
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1548.1 2009 46.2
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1547.3 2009 46.3
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1546.9 2014 46.4
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1545.4 2059 44.8
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1543.1 2010 46.2
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1542.7 2002 46.3
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1495.7 1951 45.7
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1494.9 1941 45.4
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1471.8 2023 44.0
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1463.7 1998 44.5
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1457.2 1984 44.1
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1451.4 2151 41.9
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1448.0 1940 44.4
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1436.0 2027 43.8
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1403.7 1461 53.3
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1391.7 1461 52.8
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1253.0 2078 38.7
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1230.3 2011 40.0
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1203.0 1762 42.3
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1115.5 1197 51.0
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1076.2 2006 35.8
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 1.6e-302 1043.9 1688 39.1
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 1.8e-298 1030.4 2129 34.0
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.7e-262 909.4 1692 36.6
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 1.3e-240 838.2 1482 36.4
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 9.5e-239 832.0 2186 31.2
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 2.1e-206 724.5 2113 29.7
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 4.5e-188 663.7 1990 29.5
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 8.4e-187 659.4 671 55.4
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.5e-164 585.5 1696 29.0
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 5.7e-151 540.4 1897 26.7
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.6e-145 522.3 1210 31.9
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.3e-142 512.7 444 62.4
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.2e-137 496.1 405 61.0
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 3.8e-123 448.0 337 66.5
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.8e-117 429.1 278 80.6
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 1.7e-115 422.5 385 54.5
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.0e-111 409.1 440 52.0
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.3e-107 396.4 364 58.5
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 8.0e-105 387.1 1139 30.0
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 2.8e-97 362.1 276 66.3
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 1.2e-87 330.1 198 84.3
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 2.8e-73 282.3 513 36.3
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 1.1e-72 280.4 377 44.8
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 8.4e-62 244.2 242 55.0
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.1e-53 217.2 208 53.4
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 9.3e-53 214.2 227 51.5
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 7.4e-50 204.5 183 59.0
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 3.8e-46 192.2 516 30.4
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.2e-36 160.6 315 35.9
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 3.3e-34 152.5 179 53.1
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 2.2e-30 139.8 83 75.9
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-27 129.8 599 25.4
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 2.6e-26 126.3 230 33.9
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 6.3e-25 121.7 68 95.6
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 2.2e-22 113.2 320 25.0
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 3.2e-21 109.4 68 77.9
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 3.2e-21 109.4 68 77.9
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 2.7e-20 106.3 287 29.6
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 6.1e-20 105.1 62 80.6
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 3.4e-18 99.4 66 74.2
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 4.4e-18 99.0 107 54.2
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 6.3e-17 95.1 118 44.9
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 3.1e-16 92.8 69 66.7
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-15 90.5 99 43.4
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 2.5e-13 83.2 57 73.7
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 6.8e-11 75.1 131 35.9
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 2.6e-10 73.2 55 61.8
Psat5g162320 Pisum sativum HOM05D050326 ORTHO05D006096 4.1e-08 65.9 60 58.3
Psat6g196240 Pisum sativum HOM05D050326 ORTHO05D006096 4.1e-08 65.9 60 58.3
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 3.8e-06 59.3 46 56.5


User provided reference genes

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