Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 1.6e-91 339.3 168 100.0
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 6.2e-83 310.8 168 92.3
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 3.3e-76 288.5 161 88.2
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 2.8e-75 285.4 165 85.5
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 1.8e-74 282.7 163 84.0
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 1.7e-72 276.2 154 85.7
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 2.2e-72 275.8 171 77.8
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 4.9e-72 274.6 171 77.8
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 1.4e-71 273.1 145 90.3
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 1.2e-70 270.0 153 86.3
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 5.1e-69 264.6 140 90.0
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 1.9e-68 262.7 155 80.0
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 6.9e-66 254.2 146 82.9
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 1.2e-65 253.4 149 80.5
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 1.5e-65 253.1 151 77.5
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 2.6e-65 252.3 148 78.4
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 2.6e-65 252.3 149 77.2
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 7.6e-65 250.8 138 84.8
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.0e-64 250.4 164 73.8
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 1.0e-64 250.4 152 77.6
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 1.0e-64 250.4 152 77.6
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 1.7e-64 249.6 146 80.1
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 2.2e-64 249.2 159 74.2
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 2.2e-64 249.2 156 73.7
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 2.2e-64 249.2 145 80.0
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 2.2e-64 249.2 147 76.9
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 2.9e-64 248.8 150 76.7
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 3.8e-64 248.4 149 78.5
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 5.0e-64 248.1 157 72.6
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 6.5e-64 247.7 156 73.7
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 6.5e-64 247.7 156 73.7
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 6.5e-64 247.7 151 76.8
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 1.1e-63 246.9 145 79.3
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.4e-63 246.5 148 79.1
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 1.4e-63 246.5 167 69.5
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 1.9e-63 246.1 151 77.5
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 1.9e-63 246.1 158 73.4
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 1.9e-63 246.1 153 79.1
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 1.9e-63 246.1 153 79.1
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 1.9e-63 246.1 153 79.1
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 1.9e-63 246.1 162 73.5
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 2.5e-63 245.7 155 74.8
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 2.5e-63 245.7 150 76.0
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 3.2e-63 245.4 147 77.6
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 3.2e-63 245.4 132 83.3
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 5.5e-63 244.6 146 78.1
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 5.5e-63 244.6 144 79.9
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 5.5e-63 244.6 151 76.8
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 7.2e-63 244.2 147 74.8
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 7.2e-63 244.2 134 82.8
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 9.3e-63 243.8 150 77.3
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 9.3e-63 243.8 158 70.9
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 9.3e-63 243.8 150 75.3
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 1.2e-62 243.4 138 81.9
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 1.6e-62 243.0 148 78.4
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 1.6e-62 243.0 158 72.2
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 2.1e-62 242.7 151 76.2
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 4.6e-62 241.5 148 73.6
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 6.1e-62 241.1 149 73.8
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 7.9e-62 240.7 137 80.3
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 1.3e-61 240.0 154 72.1
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 1.3e-61 240.0 147 75.5
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 1.8e-61 239.6 161 68.9
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 2.3e-61 239.2 168 67.3
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 3.0e-61 238.8 151 71.5
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 3.0e-61 238.8 145 75.9
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 3.9e-61 238.4 153 70.6
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 3.9e-61 238.4 172 66.9
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 3.9e-61 238.4 147 75.5
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 5.1e-61 238.0 153 73.2
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 5.1e-61 238.0 150 75.3
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 6.7e-61 237.7 171 65.5
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 8.7e-61 237.3 153 71.2
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 1.1e-60 236.9 170 66.5
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 1.1e-60 236.9 161 67.7
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 1.9e-60 236.1 146 72.6
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 2.5e-60 235.7 136 78.7
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 3.3e-60 235.3 149 71.8
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 3.3e-60 235.3 149 71.8
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 3.3e-60 235.3 149 71.8
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 3.3e-60 235.3 149 71.8
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 3.3e-60 235.3 170 65.9
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 5.7e-60 234.6 132 79.5
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 7.4e-60 234.2 148 73.6
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 9.7e-60 233.8 163 68.7
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 9.7e-60 233.8 160 69.4
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 2.2e-59 232.6 153 69.9
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 2.2e-59 232.6 168 64.9
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 2.8e-59 232.3 153 69.9
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 2.8e-59 232.3 153 69.9
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 2.8e-59 232.3 153 69.9
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 3.7e-59 231.9 161 69.6
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 3.7e-59 231.9 161 69.6
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 6.3e-59 231.1 160 68.1
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 6.3e-59 231.1 151 71.5
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 8.2e-59 230.7 150 72.7
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 8.2e-59 230.7 152 74.3
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 8.2e-59 230.7 160 67.5
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 1.8e-58 229.6 168 64.3
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 2.4e-58 229.2 137 76.6
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 3.1e-58 228.8 163 65.6
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 4.1e-58 228.4 155 69.0
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 1.5e-57 226.5 150 68.7
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 3.4e-57 225.3 152 68.4
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 5.9e-57 224.6 198 59.1
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 1.0e-56 223.8 147 68.7
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.2e-56 222.6 198 59.1
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.8e-56 221.9 203 57.6
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 1.1e-55 220.3 175 60.0
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 7.4e-52 207.6 132 71.2
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 2.2e-51 206.1 131 72.5
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 3.7e-51 205.3 116 81.9
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 1.2e-46 190.3 153 64.1
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 1.6e-46 189.9 97 91.8
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 1.7e-43 179.9 103 82.5
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 2.8e-43 179.1 146 56.8
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 6.3e-43 177.9 148 56.1
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 4.5e-41 171.8 149 56.4
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 3.5e-33 145.6 83 79.5
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 4.2e-23 112.1 83 61.4
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 4.7e-22 108.6 72 68.1
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 1.3e-16 90.5 152 37.5
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 8.6e-16 87.8 77 57.1
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 6.8e-13 78.2 128 33.6
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 4.3e-07 58.9 48 64.6


User provided reference genes

Program Settings