Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 1.5e-56 223.4 198 100.0
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 1.6e-53 213.4 111 98.2
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 7.9e-53 211.1 111 97.3
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 7.9e-53 211.1 111 97.3
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 8.7e-52 207.6 108 96.3
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 2.5e-51 206.1 111 92.8
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 2.5e-51 206.1 108 97.2
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 1.3e-50 203.8 111 92.8
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 1.3e-50 203.8 108 95.4
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 2.2e-50 203.0 107 97.2
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 1.2e-48 197.2 111 89.2
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.5e-48 196.8 111 89.2
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 2.0e-48 196.4 111 88.3
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 3.4e-48 195.7 111 89.2
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.4e-48 195.7 111 86.5
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 5.9e-48 194.9 111 87.4
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 7.7e-48 194.5 111 85.6
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 7.7e-48 194.5 111 85.6
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.3e-47 193.7 111 85.6
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 2.2e-47 193.0 106 92.5
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 2.9e-47 192.6 111 86.5
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 3.8e-47 192.2 111 85.6
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 3.8e-47 192.2 111 86.5
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 6.5e-47 191.4 111 86.5
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 6.5e-47 191.4 106 90.6
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 6.5e-47 191.4 106 90.6
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 6.5e-47 191.4 111 85.6
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 6.5e-47 191.4 111 85.6
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 8.5e-47 191.0 113 86.7
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 8.5e-47 191.0 113 86.7
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 1.1e-46 190.7 111 83.8
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.4e-46 190.3 111 82.9
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 2.5e-46 189.5 106 89.6
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 2.5e-46 189.5 111 83.8
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 5.5e-46 188.3 102 93.1
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 5.5e-46 188.3 111 84.7
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 5.5e-46 188.3 111 85.6
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 7.2e-46 188.0 111 85.6
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 7.2e-46 188.0 118 83.9
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 9.4e-46 187.6 111 83.8
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 1.6e-45 186.8 111 82.9
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 1.6e-45 186.8 111 83.8
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 2.1e-45 186.4 104 89.4
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 2.1e-45 186.4 111 82.9
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 2.1e-45 186.4 112 83.9
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 2.1e-45 186.4 110 87.3
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.6e-45 185.7 111 82.9
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.6e-45 185.7 111 82.9
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 4.6e-45 185.3 133 77.4
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 6.1e-45 184.9 113 85.0
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 6.1e-45 184.9 105 87.6
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 6.1e-45 184.9 111 84.7
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 7.9e-45 184.5 104 88.5
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.0e-44 184.1 105 86.7
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.0e-44 184.1 105 86.7
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 1.8e-44 183.3 105 86.7
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 1.8e-44 183.3 105 86.7
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 2.3e-44 183.0 111 80.2
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 2.3e-44 183.0 111 81.1
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 3.0e-44 182.6 106 85.8
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 5.1e-44 181.8 111 81.1
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 6.7e-44 181.4 107 84.1
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 6.7e-44 181.4 111 82.0
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 6.7e-44 181.4 111 81.1
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 8.8e-44 181.0 111 82.0
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 8.8e-44 181.0 111 82.0
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 8.8e-44 181.0 112 82.1
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 8.8e-44 181.0 103 87.4
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.1e-43 180.6 104 85.6
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.5e-43 180.3 111 81.1
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 1.5e-43 180.3 107 85.0
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 2.0e-43 179.9 112 82.1
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 2.5e-43 179.5 112 82.1
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 2.5e-43 179.5 110 80.9
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 4.3e-43 178.7 105 84.8
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 5.7e-43 178.3 110 80.9
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 7.4e-43 177.9 107 81.3
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 9.7e-43 177.6 107 82.2
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.3e-42 177.2 110 80.0
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 1.3e-42 177.2 106 83.0
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.3e-42 177.2 103 85.4
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.3e-42 177.2 103 85.4
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 1.3e-42 177.2 107 85.0
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 1.3e-42 177.2 103 84.5
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.7e-42 176.8 105 82.9
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.7e-42 176.8 107 81.3
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 2.2e-42 176.4 107 80.4
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 2.8e-42 176.0 112 81.2
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 3.7e-42 175.6 111 79.3
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 3.7e-42 175.6 110 79.1
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 4.8e-42 175.3 103 84.5
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 4.8e-42 175.3 112 80.4
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 4.8e-42 175.3 112 80.4
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 4.8e-42 175.3 106 82.1
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 8.2e-42 174.5 110 79.1
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.1e-41 174.1 107 80.4
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 1.1e-41 174.1 101 84.2
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.4e-41 173.7 112 81.2
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 2.4e-41 172.9 106 81.1
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 2.4e-41 172.9 135 68.1
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.4e-41 172.9 105 81.0
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 4.1e-41 172.2 102 82.4
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 5.3e-41 171.8 109 78.9
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 5.3e-41 171.8 109 78.9
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 5.3e-41 171.8 109 78.9
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 5.3e-41 171.8 109 78.9
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 9.1e-41 171.0 102 81.4
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 9.1e-41 171.0 101 81.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 9.1e-41 171.0 101 81.2
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 3.4e-40 169.1 104 79.8
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 5.9e-40 168.3 112 76.8
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 1.0e-39 167.5 112 76.8
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 1.3e-39 167.2 110 78.2
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 1.3e-39 167.2 110 78.2
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 3.8e-39 165.6 105 80.0
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 4.7e-37 158.7 113 70.8
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 3.9e-36 155.6 82 95.1
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 1.5e-35 153.7 109 68.8
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 4.4e-35 152.1 165 54.5
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 1.3e-34 150.6 188 50.5
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 2.2e-34 149.8 113 68.1
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 2.4e-33 146.4 81 91.4
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 1.2e-32 144.1 80 87.5
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 2.0e-32 143.3 111 66.7
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 5.9e-32 141.7 191 47.1
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 7.2e-30 134.8 77 88.3
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 8.0e-29 131.3 124 61.3
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 5.2e-28 128.6 225 40.0
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.5e-27 127.1 71 84.5
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.3e-26 124.0 78 78.2
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 2.8e-26 122.9 77 77.9
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 1.4e-25 120.6 65 92.3
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 1.4e-25 120.6 65 92.3
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 2.7e-24 116.3 70 82.9
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 6.5e-23 111.7 87 66.7
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 6.1e-21 105.1 81 69.1
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 2.3e-20 103.2 139 51.8
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 1.5e-19 100.5 74 66.2
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 2.6e-19 99.8 82 65.9
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 2.8e-18 96.3 112 50.0
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 6.3e-18 95.1 111 54.1
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 8.3e-18 94.7 75 69.3
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 5.4e-17 92.0 61 75.4
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 5.9e-16 88.6 80 60.0
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 5.9e-16 88.6 80 60.0
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-15 87.4 78 60.3
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 1.5e-14 84.0 150 41.3
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 4.7e-13 79.0 48 83.3
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 2.3e-12 76.6 51 84.3
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 5.2e-12 75.5 45 84.4
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 5.2e-12 75.5 34 100.0
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 7.5e-11 71.6 115 41.7
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 4.1e-09 65.9 46 73.9
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 1.2e-08 64.3 48 72.9
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 5.9e-08 62.0 41 75.6
Lalb_Chr23g0275001 Lupinus albus HOM05D004131 ORTHO05D004778 8.6e-07 58.2 33 90.9
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 1.5e-06 57.4 47 66.0
MCO01G557 Micromonas commoda HOM05D004131 ORTHO05D004778 3.3e-06 56.2 75 44.0
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 5.6e-06 55.5 41 70.7
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 5.6e-06 55.5 39 71.8


User provided reference genes

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