Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 1.7e-234 815.8 484 100.0
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 1.2e-171 607.1 539 75.9
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.7e-109 400.6 489 53.0
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 1.1e-103 381.3 520 49.4
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 5.6e-52 209.5 493 35.3
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 2.8e-51 207.2 495 35.6
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 1.8e-50 204.5 490 35.7
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 4.9e-48 196.4 564 37.4
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 6.4e-48 196.1 512 36.7
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 1.2e-46 191.8 494 38.5
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 1.9e-44 184.5 489 33.3
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 2.1e-43 181.0 542 36.2
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 6.4e-40 169.5 534 31.1
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 2.5e-39 167.5 472 32.6
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 9.3e-39 165.6 470 31.9
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 1.0e-37 162.2 468 30.8
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 3.9e-37 160.2 482 35.1
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 6.7e-37 159.5 488 31.1
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 2.8e-35 154.1 491 36.5
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 8.2e-35 152.5 477 37.1
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 1.1e-34 152.1 491 36.0
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 3.1e-34 150.6 498 32.3
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 4.0e-34 150.2 491 32.4
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 9.0e-34 149.1 498 34.1
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 9.0e-34 149.1 476 30.5
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 9.0e-34 149.1 474 39.0
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.2e-33 148.7 506 31.0
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 1.5e-33 148.3 471 29.5
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 2.0e-33 147.9 476 30.7
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 2.6e-33 147.5 482 34.2
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 3.4e-33 147.1 475 32.4
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 4.5e-33 146.7 545 27.5
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 7.6e-33 146.0 474 36.3
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 7.6e-33 146.0 490 33.3
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.0e-32 145.6 480 29.0
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-32 145.2 480 28.5
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.3e-32 145.2 513 30.4
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 1.7e-32 144.8 488 35.5
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 8.4e-32 142.5 482 36.7
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 1.4e-31 141.7 469 30.5
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 2.5e-31 141.0 484 29.3
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 2.5e-31 141.0 480 32.3
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 2.5e-31 141.0 476 30.3
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 3.2e-31 140.6 480 34.6
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.2e-31 140.6 483 34.8
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 4.2e-31 140.2 509 30.3
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 4.2e-31 140.2 509 30.3
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 4.2e-31 140.2 494 32.0
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 7.1e-31 139.4 495 29.9
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 1.6e-30 138.3 490 30.2
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 2.1e-30 137.9 491 32.4
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 3.5e-30 137.1 476 33.4
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 6.1e-30 136.3 292 37.7
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 6.1e-30 136.3 491 28.3
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 6.1e-30 136.3 478 36.4
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 7.9e-30 136.0 289 36.3
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 7.9e-30 136.0 539 32.5
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 7.9e-30 136.0 509 29.5
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 1.0e-29 135.6 484 30.8
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 1.3e-29 135.2 490 30.6
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 3.0e-29 134.0 593 26.6
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 5.1e-29 133.3 472 26.9
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 5.1e-29 133.3 522 29.1
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 6.7e-29 132.9 478 28.2
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 6.7e-29 132.9 489 27.8
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 1.1e-28 132.1 564 26.8
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.1e-28 132.1 495 29.7
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.1e-28 132.1 495 29.7
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 1.5e-28 131.7 530 28.9
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 2.5e-28 131.0 524 28.1
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 3.3e-28 130.6 470 28.3
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 7.4e-28 129.4 477 32.7
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 1.6e-27 128.3 477 32.7
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 2.8e-27 127.5 472 27.1
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 3.7e-27 127.1 127 52.0
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 3.7e-27 127.1 259 37.1
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.7e-27 127.1 517 28.0
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 3.7e-27 127.1 509 30.1
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 8.2e-27 125.9 511 29.4
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.1e-26 125.6 479 28.4
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.8e-26 124.8 518 25.7
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 3.1e-26 124.0 465 27.3
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 3.1e-26 124.0 487 29.0
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 4.1e-26 123.6 489 27.4
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 5.3e-26 123.2 485 35.3
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 6.9e-26 122.9 506 26.1
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.2e-25 122.1 469 28.4
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.6e-25 120.9 472 29.9
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 2.6e-25 120.9 136 50.0
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 3.4e-25 120.6 473 28.8
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 3.4e-25 120.6 475 29.1
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 3.4e-25 120.6 503 27.4
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 4.5e-25 120.2 478 26.2
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 7.7e-25 119.4 472 25.8
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.3e-24 118.6 506 33.2
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 1.7e-24 118.2 259 38.2
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 2.2e-24 117.9 490 27.8
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 2.9e-24 117.5 168 40.5
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 5.0e-24 116.7 473 26.4
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 5.0e-24 116.7 473 26.4
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 1.1e-23 115.5 492 31.3
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 5.5e-23 113.2 497 28.2
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 7.2e-23 112.8 234 38.0
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 9.4e-23 112.5 488 25.4
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 1.2e-22 112.1 479 26.1
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.6e-22 111.7 494 25.7
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 2.7e-22 110.9 103 56.3
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 2.7e-22 110.9 520 27.7
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 3.6e-22 110.5 211 37.9
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 4.6e-22 110.2 465 27.5
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 7.9e-22 109.4 104 53.8
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.8e-21 108.2 99 54.5
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 3.9e-21 107.1 599 28.9
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 6.7e-21 106.3 99 53.5
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 8.8e-21 105.9 130 45.4
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 8.8e-21 105.9 102 49.0
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 2.5e-20 104.4 132 48.5
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 3.3e-20 104.0 345 27.2
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 3.3e-20 104.0 469 28.8
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 4.3e-20 103.6 131 46.6
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 9.7e-20 102.4 132 47.7
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 2.2e-19 101.3 130 44.6
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 4.1e-18 97.1 255 34.1
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 5.3e-18 96.7 166 41.0
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 1.5e-17 95.1 192 37.5
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 3.4e-17 94.0 208 32.7
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 5.0e-16 90.1 99 46.5
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.1e-15 89.0 270 31.9
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.5e-15 87.8 53 83.0
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 3.2e-15 87.4 106 39.6
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 5.5e-15 86.7 487 23.2
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 2.7e-14 84.3 480 23.5
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 1.0e-13 82.4 362 26.8
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 1.1e-12 79.0 103 41.7
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 1.3e-11 75.5 103 40.8
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 2.4e-10 71.2 56 57.1
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 3.1e-10 70.9 103 35.9
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 9.1e-10 69.3 52 63.5
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 1.3e-08 65.5 56 53.6
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 1.7e-08 65.1 56 53.6
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 2.2e-08 64.7 426 33.1
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 5.0e-08 63.5 55 52.7
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 5.0e-08 63.5 55 52.7
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 5.0e-08 63.5 96 38.5
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 1.5e-07 62.0 53 52.8
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 3.2e-07 60.8 40 67.5
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 4.2e-07 60.5 58 51.7


User provided reference genes

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