Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G201100 Glycine max HOM05D007160 ORTHO05D005331 6.0e-126 454.9 376 100.0
Glyma.13G175300 Glycine max HOM05D007160 ORTHO05D005331 2.5e-87 326.6 390 77.2
VMungo0251G1795 Vigna mungo HOM05D007160 ORTHO05D005331 1.1e-79 301.2 394 70.3
Phvul.002G232100 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 1.3e-56 224.6 387 66.9
Medtr4g088385 Medicago truncatula HOM05D007160 ORTHO05D005331 6.5e-48 195.7 384 57.0
TPR.G19911 Trifolium pratense HOM05D007160 ORTHO05D005331 9.4e-47 191.8 400 52.8
Ca_18588_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 2.2e-40 170.6 358 41.6
Glyma.15G077600 Glycine max HOM05D007160 ORTHO05D005331 4.9e-35 152.9 379 44.1
Lj4g0028244 Lotus japonicus HOM05D007160 ORTHO05D005331 1.1e-34 151.8 389 42.4
Lj6g0014856 Lotus japonicus HOM05D007160 ORTHO05D005331 3.1e-34 150.2 388 46.1
Glyma.13G236100 Glycine max HOM05D007160 ORTHO05D005331 1.6e-33 147.9 382 39.8
Lalb_Chr09g0327841 Lupinus albus HOM05D007160 ORTHO05D005331 2.0e-33 147.5 408 50.0
Ca_00358_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 2.9e-32 143.7 386 37.8
Ca_30973_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 2.9e-32 143.7 386 37.8
VMungo0540G2483 Vigna mungo HOM05D007160 ORTHO05D005331 4.0e-29 133.3 380 38.2
Phvul.006G182700 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 7.5e-28 129.0 394 35.0
Medtr2g014400 Medicago truncatula HOM05D007160 ORTHO05D005331 7.0e-26 122.5 344 36.6
Lalb_Chr20g0121591 Lupinus albus HOM05D007160 ORTHO05D005331 1.0e-24 118.6 355 34.6
Psat1g203080 Pisum sativum HOM05D007160 ORTHO05D005331 5.0e-24 116.3 400 33.2
Cfa000523 Carpinus fangiana HOM05D007160 ORTHO05D005331 5.2e-21 106.3 355 32.1
arahy.Tifrunner.gnm1.ann1.704E4A Arachis hypogaea HOM05D007160 ORTHO05D005331 2.0e-20 104.4 397 36.0
Haze_06386 Corylus avellana HOM05D007160 ORTHO05D005331 3.7e-19 100.1 391 31.2
arahy.Tifrunner.gnm1.ann1.AUV6LD Arachis hypogaea HOM05D007160 ORTHO05D005331 4.9e-19 99.8 418 30.4
QL05p042103 Quercus lobata HOM05D007160 ORTHO05D005331 2.0e-17 94.4 183 38.8
QL05p042154 Quercus lobata HOM05D007160 ORTHO05D005331 2.0e-17 94.4 183 38.8
MD05G1310400 Malus domestica HOM05D007160 ORTHO05D005331 6.0e-17 92.8 384 43.8
TAR627G1090 Trochodendron aralioides HOM05D018497 ORTHO05D005331 1.3e-16 91.7 161 41.6
Dinv17351 Davidia involucrata HOM05D007160 ORTHO05D005331 3.0e-16 90.5 124 46.0
CiPaw.10G052400 Carya illinoinensis HOM05D007160 ORTHO05D005331 1.2e-14 85.1 129 45.0
Potri.004G048301 Populus trichocarpa HOM05D007160 ORTHO05D005331 4.0e-13 80.1 103 49.5
Actinidia16571 Actinidia chinensis HOM05D007160 ORTHO05D005331 6.8e-13 79.3 148 48.6
Prupe.4G052200 Prunus persica HOM05D007160 ORTHO05D005331 1.2e-12 78.6 380 34.7
CiPaw.09G063200 Carya illinoinensis HOM05D007160 ORTHO05D005331 1.5e-12 78.2 99 53.5
TWI63G1823 Tripterygium wilfordii HOM05D007160 ORTHO05D005331 2.0e-12 77.8 392 38.0
DCAR_004048 Daucus carota HOM05D007160 ORTHO05D005331 4.4e-12 76.6 124 41.9
FAN16G2322 Fragaria x ananassa HOM05D007160 ORTHO05D005331 7.5e-12 75.9 153 45.1
Psat7g116440 Pisum sativum HOM05D007160 ORTHO05D005331 7.5e-12 75.9 82 59.8
Rhsim13G0180200 Rhododendron simsii HOM05D007160 ORTHO05D005331 1.7e-11 74.7 83 51.8
Cc02_g13790 Coffea canephora HOM05D007160 ORTHO05D005331 4.9e-11 73.2 141 39.7
SalBow8G4606 Salvia bowleyana HOM05D007160 ORTHO05D005331 4.9e-11 73.2 82 50.0
Prupe.4G052000 Prunus persica HOM05D007160 ORTHO05D005331 6.4e-11 72.8 91 51.6
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 1.1e-10 72.0 61 62.3
EL10Ac8g20435 Beta vulgaris HOM05D007160 ORTHO05D005331 1.4e-10 71.6 160 41.2
CSS0024231 Camellia sinensis var. sinensis HOM05D007160 ORTHO05D005331 1.4e-10 71.6 92 51.1
SalBow8G5472 Salvia bowleyana HOM05D007160 ORTHO05D005331 1.9e-10 71.2 379 31.7
FAN21G2372 Fragaria x ananassa HOM05D007160 ORTHO05D005331 2.4e-10 70.9 167 40.7
Potri.011G057500 Populus trichocarpa HOM05D007160 ORTHO05D005331 2.4e-10 70.9 196 37.2
SalBow8G2878 Salvia bowleyana HOM05D007160 ORTHO05D005331 2.4e-10 70.9 379 31.9
MD10G1289700 Malus domestica HOM05D007160 ORTHO05D005331 4.1e-10 70.1 98 49.0
Nitab4.5_0001375g0150 Nicotiana tabacum HOM05D007160 ORTHO05D005331 4.1e-10 70.1 89 48.3
FvH4_3g08671 Fragaria vesca HOM05D007160 ORTHO05D005331 5.4e-10 69.7 167 41.9
FAN11G0877 Fragaria x ananassa HOM05D007160 ORTHO05D005331 5.4e-10 69.7 167 41.9
Nitab4.5_0001375g0140 Nicotiana tabacum HOM05D007160 ORTHO05D005331 5.4e-10 69.7 89 49.4
Oeu014779.1 Olea europaea HOM05D007160 ORTHO05D005331 7.1e-10 69.3 381 27.6
TAR624G0339 Trochodendron aralioides HOM05D007160 ORTHO05D005331 9.2e-10 68.9 169 32.5
Nitab4.5_0000516g0060 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.2e-09 68.6 89 48.3
Sed0008189 Sechium edule HOM05D007160 ORTHO05D005331 1.2e-09 68.6 91 52.7
Nitab4.5_0001955g0170 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.6e-09 68.2 77 53.2
DCAR_008006 Daucus carota HOM05D007160 ORTHO05D005331 2.1e-09 67.8 161 38.5
Gohir.D10G028200 Gossypium hirsutum HOM05D007160 ORTHO05D005331 3.5e-09 67.0 171 33.9
Nitab4.5_0004359g0050 Nicotiana tabacum HOM05D007160 ORTHO05D005331 4.6e-09 66.6 135 39.3
CAN.G529.50 Capsicum annuum HOM05D007160 ORTHO05D005331 6.0e-09 66.2 89 49.4
Duzib192G1060 Durio zibethinus HOM05D007160 ORTHO05D005331 6.0e-09 66.2 406 25.1
Gorai.011G030000 Gossypium raimondii HOM05D007160 ORTHO05D005331 6.0e-09 66.2 149 35.6
Manes.17G049000 Manihot esculenta HOM05D007160 ORTHO05D005331 6.0e-09 66.2 95 45.3
Peaxi162Scf00031g00084 Petunia axillaris HOM05D007160 ORTHO05D005331 7.8e-09 65.9 385 41.8
Sopen02g022600 Solanum pennellii HOM05D007160 ORTHO05D005331 7.8e-09 65.9 91 53.8
COL.COLO4_35512 Corchorus olitorius HOM05D008876 ORTHO05D010747 1.0e-08 65.5 89 47.2
MSTRG.15854 Avicennia marina HOM05D007160 ORTHO05D005331 1.3e-08 65.1 376 24.7
PGSC0003DMG400022807 Solanum tuberosum HOM05D007160 ORTHO05D005331 1.7e-08 64.7 81 45.7
Nitab4.5_0000516g0090 Nicotiana tabacum HOM05D007160 ORTHO05D005331 2.3e-08 64.3 89 47.2
Thecc.06G181500 Theobroma cacao HOM05D007160 ORTHO05D005331 2.3e-08 64.3 164 34.1
Solyc02g077710.1 Solanum lycopersicum HOM05D007160 ORTHO05D005331 3.9e-08 63.5 154 39.6
TAR626G0423 Trochodendron aralioides HOM05D018497 ORTHO05D021348 6.6e-08 62.8 135 36.3
Gorai.009G167000 Gossypium raimondii HOM05D007160 ORTHO05D005331 8.6e-08 62.4 179 32.4
Nitab4.5_0001375g0120 Nicotiana tabacum HOM05D007160 ORTHO05D005331 8.6e-08 62.4 89 44.9
TPR.G11687 Trifolium pratense HOM05D007160 ORTHO05D005331 8.6e-08 62.4 57 59.6
Gohir.A10G027800 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.1e-07 62.0 381 44.1
Nitab4.5_0000516g0070 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.1e-07 62.0 89 44.9
Nitab4.5_0003341g0030 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.5e-07 61.6 76 47.4
Sc23g0001700 Simmondsia chinensis HOM05D028926 ORTHO05D005331 1.5e-07 61.6 166 33.7
TAR629G2975 Trochodendron aralioides HOM05D018497 ORTHO05D021348 1.5e-07 61.6 149 34.2
Thhalv10008366m.g Eutrema salsugineum HOM05D009159 ORTHO05D005331 1.9e-07 61.2 133 33.1
Peaxi162Scf01018g00012 Petunia axillaris HOM05D007160 ORTHO05D005331 1.9e-07 61.2 384 35.7
Sabra04G0030300 Salix brachista HOM05D007160 ORTHO05D005331 2.5e-07 60.8 395 33.2
Peaxi162Scf00926g00031 Petunia axillaris HOM05D007160 ORTHO05D005331 4.3e-07 60.1 77 49.4
BcaB03g13928 Brassica carinata HOM05D009159 ORTHO05D005331 5.6e-07 59.7 83 48.2
Gohir.D05G162000 Gossypium hirsutum HOM05D007160 ORTHO05D005331 5.6e-07 59.7 186 32.8
PGSC0003DMG400031775 Solanum tuberosum HOM05D007160 ORTHO05D005331 5.6e-07 59.7 170 34.7
Hma1.2p1_0558F.1_g178530 Hydrangea macrophylla HOM05D007160 ORTHO05D005331 7.3e-07 59.3 405 33.6
Oeu001099.1 Olea europaea HOM05D007160 ORTHO05D005331 9.5e-07 58.9 85 41.2
C03p75110 Brassica napus HOM05D009159 ORTHO05D005331 1.2e-06 58.5 130 36.2
SalBow7G0182 Salvia bowleyana HOM05D007160 ORTHO05D005331 1.2e-06 58.5 81 45.7
SalBow7G0780 Salvia bowleyana HOM05D007160 ORTHO05D005331 1.2e-06 58.5 81 45.7
ClCG01G023230 Citrullus lanatus HOM05D007160 ORTHO05D005331 1.6e-06 58.2 405 25.7
Ciclev10016096m.g Citrus clementina HOM05D008876 ORTHO05D010747 2.1e-06 57.8 83 42.2
Sc17g0005960 Simmondsia chinensis HOM05D028926 ORTHO05D005331 2.1e-06 57.8 172 30.8
Duzib235G1074 Durio zibethinus HOM05D007160 ORTHO05D005331 2.8e-06 57.4 402 32.3
Nitab4.5_0006098g0020 Nicotiana tabacum HOM05D007160 ORTHO05D005331 3.6e-06 57.0 80 43.8
Dinv01518 Davidia involucrata HOM05D008876 ORTHO05D010747 6.2e-06 56.2 80 43.8
Lj1P691T50 Lonicera japonica HOM05D008876 ORTHO05D010747 6.2e-06 56.2 92 45.7
Potri.007G137001 Populus trichocarpa HOM05D008876 ORTHO05D010747 6.2e-06 56.2 81 43.2
BcaB03g12106 Brassica carinata HOM05D009159 ORTHO05D005331 8.1e-06 55.8 134 32.1


User provided reference genes

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