Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 1.7e-112 409.5 217 100.0
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 5.4e-103 377.9 217 94.0
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 7.8e-86 320.9 222 80.2
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 2.1e-83 312.8 218 79.8
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 6.2e-83 311.2 218 79.4
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 2.4e-58 229.6 228 62.3
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 3.3e-52 209.1 231 55.4
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 1.1e-50 204.1 228 59.2
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 1.7e-48 196.8 228 58.3
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 3.0e-45 186.0 240 55.0
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 5.5e-39 165.2 217 52.1
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.2e-38 164.1 213 52.1
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 1.5e-33 147.1 223 44.8
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 2.6e-33 146.4 206 49.0
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 8.4e-32 141.4 219 44.3
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 7.9e-30 134.8 225 41.8
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 9.6e-28 127.9 226 43.4
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 4.8e-27 125.6 226 40.3
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 1.1e-26 124.4 226 40.3
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.4e-26 124.0 186 46.8
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 1.4e-26 124.0 228 42.5
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 2.4e-26 123.2 217 41.0
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 2.0e-25 120.2 201 44.8
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.7e-24 117.1 253 37.9
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 2.2e-24 116.7 232 39.2
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 5.0e-24 115.5 231 39.0
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 6.5e-24 115.2 221 43.9
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 8.5e-24 114.8 211 39.8
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 8.5e-24 114.8 217 40.6
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 1.9e-23 113.6 241 39.0
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 1.9e-23 113.6 228 43.0
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.9e-23 113.6 204 42.6
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 1.9e-23 113.6 217 38.2
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 7.2e-23 111.7 222 38.3
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 1.2e-22 110.9 226 38.1
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 4.6e-22 109.0 222 41.4
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 4.6e-22 109.0 221 42.1
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 6.1e-22 108.6 218 40.4
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 6.1e-22 108.6 216 40.7
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 7.9e-22 108.2 222 41.9
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 7.9e-22 108.2 216 40.7
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.3e-21 107.5 95 60.0
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 3.9e-21 105.9 228 42.5
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 3.9e-21 105.9 227 38.8
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 5.1e-21 105.5 236 38.1
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 5.1e-21 105.5 236 39.0
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 1.1e-20 104.4 219 37.0
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 1.1e-20 104.4 234 37.6
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.1e-20 104.4 220 41.4
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 1.5e-20 104.0 237 37.6
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 1.5e-20 104.0 221 41.6
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 2.5e-20 103.2 222 41.4
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 3.3e-20 102.8 216 39.8
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 4.3e-20 102.4 229 38.9
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 5.7e-20 102.1 207 39.6
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 9.7e-20 101.3 240 36.7
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 9.7e-20 101.3 217 37.3
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 1.3e-19 100.9 214 39.7
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 1.3e-19 100.9 220 35.9
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 1.6e-19 100.5 199 40.7
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 2.2e-19 100.1 220 39.5
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 6.3e-19 98.6 209 40.7
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.1e-18 97.8 194 39.2
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 1.4e-18 97.4 241 39.8
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.8e-18 97.1 224 37.9
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 3.1e-18 96.3 193 40.4
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 4.1e-18 95.9 220 38.6
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 4.1e-18 95.9 237 38.0
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 6.9e-18 95.1 240 37.5
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 9.1e-18 94.7 223 39.9
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 1.5e-17 94.0 219 38.4
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 4.5e-17 92.4 281 32.4
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 5.9e-17 92.0 194 37.6
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 1.0e-16 91.3 214 39.7
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 2.2e-16 90.1 150 41.3
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 2.9e-16 89.7 227 37.0
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 2.9e-16 89.7 227 37.0
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 2.9e-16 89.7 209 39.2
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 3.8e-16 89.4 227 37.0
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 5.0e-16 89.0 231 35.9
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 1.1e-15 87.8 229 35.8
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 1.9e-15 87.0 210 37.6
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 5.5e-15 85.5 237 35.0
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 7.2e-15 85.1 225 34.2
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 7.2e-15 85.1 217 35.5
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 9.4e-15 84.7 231 35.1
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 1.2e-14 84.3 213 36.2
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 1.6e-14 84.0 209 34.4
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 3.6e-14 82.8 203 34.0
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 3.6e-14 82.8 225 34.7
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 4.6e-14 82.4 184 38.0
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 2.3e-13 80.1 210 35.7
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 2.3e-13 80.1 222 34.7
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 3.0e-13 79.7 186 39.2
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 5.1e-13 79.0 210 34.8
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 6.7e-13 78.6 210 34.8
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 6.7e-13 78.6 210 35.2
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 7.4e-12 75.1 160 41.2
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 9.7e-12 74.7 119 42.0
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 9.7e-12 74.7 211 34.1
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 3.7e-11 72.8 213 37.6
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 3.7e-11 72.8 208 35.6
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 4.8e-11 72.4 196 36.7
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 6.3e-11 72.0 217 35.5
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 8.2e-11 71.6 213 33.8
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 8.2e-11 71.6 196 36.7
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 1.8e-10 70.5 180 36.1
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 9.1e-10 68.2 161 33.5
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 7.7e-09 65.1 158 35.4
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.0e-08 64.7 158 34.8
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 5.0e-08 62.4 215 33.5
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 6.5e-08 62.0 208 32.7
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 1.1e-07 61.2 202 32.2
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 1.4e-07 60.8 80 43.8
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 4.2e-07 59.3 171 33.3
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 9.4e-07 58.2 213 30.0
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 1.6e-06 57.4 167 29.9
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 2.7e-06 56.6 100 38.0


User provided reference genes

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