Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 0.0e+00 1654.4 863 100.0
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 0.0e+00 1540.8 866 94.1
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 0.0e+00 1385.5 861 85.5
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 0.0e+00 1385.2 868 85.6
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 0.0e+00 1236.9 928 75.1
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 0.0e+00 1195.3 964 71.0
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 0.0e+00 1183.3 963 70.0
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 0.0e+00 1167.1 890 74.4
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 0.0e+00 1163.3 890 74.2
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 0.0e+00 1157.9 900 73.4
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 0.0e+00 1130.9 996 65.9
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 0.0e+00 1122.1 895 72.3
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 2.5e-305 1052.0 880 69.2
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 2.9e-269 932.2 894 61.6
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 1.4e-263 913.3 896 62.2
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 3.5e-262 908.7 884 60.7
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.9e-261 905.6 779 64.8
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-260 903.7 779 64.6
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.4e-258 896.7 781 65.4
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.6e-254 883.2 900 58.9
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 7.7e-254 880.9 768 64.2
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 1.8e-250 869.8 937 58.3
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 6.8e-250 867.8 914 57.8
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 8.9e-250 867.5 914 56.9
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 4.9e-248 861.7 936 56.2
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 2.7e-246 855.9 938 56.7
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.0e-242 844.0 913 56.3
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.0e-241 839.7 917 55.4
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 9.8e-241 837.4 905 58.0
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 1.4e-239 833.6 893 56.7
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.3e-237 826.2 905 56.8
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 3.6e-235 818.9 928 56.0
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.1e-234 817.4 913 56.4
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 1.4e-234 817.0 938 55.8
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.3e-234 816.2 901 56.3
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 5.2e-234 815.1 908 55.3
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.4e-233 812.4 967 52.9
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 4.4e-233 812.0 897 55.6
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 2.2e-232 809.7 758 61.3
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 2.4e-231 806.2 913 56.6
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 9.2e-231 804.3 965 53.1
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 6.0e-230 801.6 919 54.5
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.3e-229 800.4 968 52.7
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.2e-227 793.9 965 53.1
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-226 790.8 966 52.5
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 5.2e-226 788.5 914 54.6
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 6.8e-226 788.1 901 54.1
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 2.9e-224 782.7 932 52.0
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 8.3e-224 781.2 957 51.9
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-222 776.9 878 55.6
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.5e-220 769.6 925 53.7
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 3.3e-220 769.2 911 53.9
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.1e-218 764.2 886 53.3
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 4.9e-216 755.4 973 50.3
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 4.2e-215 752.3 991 49.6
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 5.4e-215 751.9 964 50.3
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 2.1e-214 750.0 733 59.3
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 4.6e-214 748.8 818 55.1
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.3e-213 747.3 802 57.9
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.9e-213 745.7 925 52.3
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 1.5e-212 743.8 910 53.1
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.4e-210 736.5 853 53.7
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 5.3e-210 735.3 907 52.3
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 2.6e-209 733.0 850 54.0
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 4.9e-208 728.8 1081 46.3
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 6.4e-208 728.4 978 47.8
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.1e-207 727.6 966 50.6
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.4e-207 727.2 911 51.5
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 5.4e-207 725.3 911 51.6
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.7e-206 723.0 912 51.3
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 7.8e-206 721.5 926 50.8
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.5e-204 717.2 1023 47.8
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.1e-202 711.1 925 51.1
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.8e-202 710.3 903 49.8
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 6.4e-200 701.8 855 51.6
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.1e-199 701.0 970 49.2
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 7.4e-196 688.3 886 49.7
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 2.1e-195 686.8 848 50.9
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 3.7e-195 686.0 794 52.0
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 4.8e-195 685.6 919 49.4
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 1.1e-194 684.5 891 49.7
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 1.1e-194 684.5 891 49.7
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.1e-194 684.5 884 49.5
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 2.4e-194 683.3 892 50.1
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 3.1e-194 682.9 927 49.1
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.0e-193 680.2 887 49.8
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 2.6e-193 679.9 887 49.9
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.3e-192 677.6 958 48.0
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 2.2e-192 676.8 888 49.4
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 2.2e-192 676.8 888 49.4
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 6.5e-192 675.2 888 49.4
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.4e-191 674.1 889 49.4
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 5.5e-191 672.2 810 51.5
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 5.5e-191 672.2 902 49.4
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.2e-190 671.0 912 48.2
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 2.1e-190 670.2 919 48.4
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 2.1e-190 670.2 887 49.6
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 2.1e-190 670.2 880 49.7
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.0e-189 667.9 905 49.0
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 2.5e-188 663.3 953 47.5
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.3e-187 661.0 889 49.6
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 3.7e-187 659.4 954 47.2
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 8.2e-187 658.3 953 46.9
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 4.5e-185 652.5 1015 45.7
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.3e-184 651.0 808 51.9
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.7e-184 650.6 796 49.5
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.9e-184 649.8 890 48.4
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.2e-183 646.4 879 48.1
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 8.7e-181 638.3 799 49.7
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.5e-180 636.7 852 48.8
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 2.8e-179 633.3 1013 44.7
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 3.7e-179 632.9 794 51.0
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 8.2e-179 631.7 911 47.3
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 2.4e-178 630.2 874 49.0
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 3.4e-177 626.3 867 48.7
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.2e-176 623.6 932 47.0
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 1.4e-175 620.9 887 47.9
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.1e-174 617.1 846 47.3
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.1e-174 617.1 846 47.3
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 6.1e-174 615.5 783 51.3
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 7.9e-174 615.1 917 44.4
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.3e-155 554.7 912 44.8
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.1e-154 551.6 922 44.4
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 2.4e-154 550.4 802 44.5
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 3.1e-154 550.1 924 41.8
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 3.8e-152 543.1 882 42.7
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.1e-151 541.6 956 43.1
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 1.6e-129 468.0 806 41.9
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.3e-128 464.2 756 42.9
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 4.7e-118 429.9 955 35.1
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.1e-117 428.7 804 37.6
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.1e-117 428.7 804 37.6
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 3.4e-108 397.1 661 42.2
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 7.1e-106 389.4 890 35.3
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 7.8e-105 386.0 381 61.9
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 5.1e-104 383.3 526 49.0
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 4.6e-97 360.1 370 57.3
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.1e-90 339.0 329 59.9
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.9e-80 303.9 287 57.8
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.8e-72 278.5 961 28.2
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.1e-70 271.6 375 48.5
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 2.5e-66 258.1 385 49.1
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 4.6e-65 253.8 260 56.5
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 3.0e-64 251.1 459 39.2
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.8e-61 241.9 251 56.6
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.3e-43 182.6 139 72.7
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 5.7e-39 167.2 471 34.4
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 3.5e-36 157.9 216 47.7
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.3e-35 156.0 187 55.1
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.5e-34 152.5 111 70.3
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.2e-34 151.0 92 83.7
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 4.2e-34 151.0 187 44.4
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 4.4e-31 141.0 112 69.6
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.1e-29 136.3 204 46.1
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 9.1e-29 133.3 88 77.3
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 1.7e-27 129.0 158 45.6
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 3.8e-27 127.9 84 79.8
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 3.6e-25 121.3 171 46.8
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.8e-24 119.0 79 77.2
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 8.8e-24 116.7 75 72.0
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 7.5e-23 113.6 63 90.5
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 9.2e-21 106.7 94 58.5
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 5.9e-20 104.0 73 72.6
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 1.7e-19 102.4 89 58.4
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 8.6e-19 100.1 69 75.4
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 4.3e-18 97.8 84 58.3
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 7.3e-18 97.1 89 56.2
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 4.7e-17 94.4 94 56.4
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 1.8e-16 92.4 120 44.2
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.2e-13 80.1 59 79.7
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.3e-11 75.5 118 41.5
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 8.6e-11 73.6 126 39.7
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.9e-10 72.4 87 48.3
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 7.3e-10 70.5 99 46.5
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 2.8e-09 68.6 68 51.5
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 3.6e-09 68.2 77 53.2
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 4.7e-09 67.8 61 54.1
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 1.8e-08 65.9 60 53.3
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.2e-08 64.3 129 38.8
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 2.0e-07 62.4 311 25.7
VMungo1127G0793 Vigna mungo HOM05D001410 ORTHO05D000299 9.8e-07 60.1 36 77.8
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 1.7e-06 59.3 59 52.5


User provided reference genes

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