Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 0.0e+00 1560.8 778 100.0
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 0.0e+00 1365.5 778 88.8
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 0.0e+00 1365.1 780 87.2
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 0.0e+00 1362.4 778 88.4
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 0.0e+00 1360.9 779 87.8
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 0.0e+00 1357.8 778 86.6
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 0.0e+00 1344.3 789 85.0
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1312.0 778 82.6
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 0.0e+00 1307.0 778 84.1
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1304.7 803 80.3
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1202.6 777 76.8
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1202.6 777 76.8
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1170.6 779 75.0
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1168.7 778 74.7
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1165.2 778 74.6
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1152.1 778 73.0
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1150.6 778 73.0
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1148.7 778 73.7
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1145.2 781 73.9
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 0.0e+00 1144.0 778 72.4
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1137.5 779 73.6
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1134.4 780 73.5
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 0.0e+00 1125.2 779 71.9
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 0.0e+00 1123.6 778 72.2
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1121.7 797 71.8
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1119.4 783 71.5
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 0.0e+00 1117.4 779 72.0
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 0.0e+00 1116.3 778 72.0
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 0.0e+00 1115.1 776 71.8
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1114.8 776 72.3
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1114.8 775 71.6
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1113.6 778 72.4
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1109.7 789 71.4
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 0.0e+00 1099.0 750 73.6
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 0.0e+00 1097.4 779 70.9
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1092.0 779 71.0
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1078.2 881 63.8
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 0.0e+00 1077.8 869 64.2
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 5.8e-309 1063.9 781 67.7
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 1.7e-308 1062.4 778 69.7
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 2.9e-308 1061.6 781 68.0
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 2.9e-308 1061.6 781 67.9
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 6.4e-308 1060.4 779 67.1
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 1.9e-307 1058.9 782 68.4
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.4e-307 1058.5 778 69.0
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 9.3e-307 1056.6 778 68.6
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 7.9e-306 1053.5 778 68.8
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 3.0e-305 1051.6 779 66.8
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 2.5e-304 1048.5 778 68.1
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 3.1e-302 1041.6 772 67.0
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 6.9e-302 1040.4 781 68.8
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 5.8e-301 1037.3 779 66.0
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 1.7e-300 1035.8 776 66.8
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 1.7e-300 1035.8 784 67.0
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 2.2e-300 1035.4 779 66.0
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 2.9e-300 1035.0 782 67.1
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 2.9e-300 1035.0 782 67.5
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 4.9e-300 1034.2 771 66.3
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 4.9e-300 1034.2 776 66.0
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 6.4e-300 1033.9 772 66.3
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 3.2e-299 1031.6 772 66.2
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 4.2e-299 1031.2 771 66.1
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 7.1e-299 1030.4 784 67.1
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 1.2e-298 1029.6 780 65.4
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 4.6e-298 1027.7 776 66.5
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 1.8e-297 1025.8 779 65.2
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 8.7e-297 1023.5 777 66.7
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 1.1e-296 1023.1 772 65.3
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 2.5e-296 1021.9 841 62.9
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 6.5e-292 1007.3 782 65.9
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 3.2e-291 1005.0 781 64.1
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 2.1e-290 1002.3 741 68.8
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 4.6e-290 1001.1 780 65.6
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 6.0e-290 1000.7 797 63.4
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 1.0e-289 1000.0 776 64.0
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 5.1e-289 997.7 786 65.4
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 6.7e-289 997.3 880 59.5
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 3.4e-285 984.9 723 68.7
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.0e-284 983.4 774 62.5
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 1.1e-278 963.4 778 62.6
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.8e-273 946.0 746 62.2
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 5.7e-272 941.0 774 62.0
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 1.4e-270 936.4 784 60.8
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.0e-268 930.2 539 87.2
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 2.5e-259 899.0 784 59.3
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 2.9e-252 875.5 780 58.6
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 6.5e-252 874.4 799 57.4
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 3.2e-214 749.2 532 70.9
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 7.1e-214 748.0 773 50.8
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 6.2e-210 734.9 498 71.3
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.7e-191 673.7 479 70.4
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.8e-188 663.7 785 48.2
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.5e-179 633.3 435 70.3
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 3.3e-179 632.9 596 57.2
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 4.2e-158 562.8 796 40.1
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 3.6e-149 533.1 506 54.5
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 1.5e-147 527.7 791 39.4
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.2e-143 513.8 404 65.8
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 6.5e-135 485.7 501 55.1
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 1.4e-113 414.8 266 78.9
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 3.2e-113 413.7 752 35.0
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.5e-110 404.8 829 33.8
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 9.8e-107 392.1 444 50.7
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.0e-103 382.1 449 49.0
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 6.6e-103 379.4 190 91.1
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 8.3e-98 362.5 379 50.7
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 5.1e-87 326.6 381 48.3
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.3e-86 322.8 256 65.6
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.5e-78 297.7 182 80.2
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 2.8e-69 267.7 207 60.9
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 4.0e-68 263.8 391 38.9
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.3e-55 222.2 771 26.3
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 4.6e-48 197.2 173 63.0
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 1.1e-41 176.0 324 38.0
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 3.2e-41 174.5 225 42.7
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 2.6e-38 164.9 474 27.0
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 1.7e-37 162.2 255 37.3
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 1.0e-34 152.9 107 63.6
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 2.7e-32 144.8 164 49.4
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.4e-31 142.5 80 83.8
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.0e-31 141.4 80 82.5
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 5.2e-31 140.6 506 24.5
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 1.5e-30 139.0 488 25.6
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.7e-29 135.6 86 73.3
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.4e-28 132.5 71 83.1
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 2.4e-28 131.7 109 56.9
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 3.1e-28 131.3 105 62.9
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 9.1e-28 129.8 80 77.5
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 3.5e-27 127.9 109 56.0
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.7e-27 126.7 83 73.5
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.0e-26 126.3 79 78.5
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 1.7e-26 125.6 84 71.4
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.0e-26 124.0 105 58.1
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 5.0e-26 124.0 61 91.8
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.5e-26 123.2 92 63.0
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 9.4e-25 119.8 153 43.8
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 1.8e-23 115.5 61 85.2
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 3.0e-23 114.8 61 80.3
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.6e-19 102.4 61 78.7
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 2.7e-19 101.7 55 83.6
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 5.5e-17 94.0 57 78.9
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 1.2e-16 92.8 78 53.8
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.6e-16 91.3 66 68.2
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 4.7e-16 90.9 61 65.6
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.0e-15 89.7 55 78.2
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.3e-15 88.6 80 60.0
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 9.8e-14 83.2 80 51.2
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.7e-13 82.4 75 54.7
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-12 79.7 61 60.7
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.1e-12 78.2 55 65.5
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.9e-11 73.9 60 61.7
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.0e-08 63.5 80 46.2
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 1.0e-07 63.2 31 90.3
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 1.0e-07 63.2 46 67.4
SHI02115 Sapria himalayana HOM05D004656 ORTHO05D005404 2.0e-06 58.9 31 77.4
Mapoly0007s0003 Marchantia polymorpha HOM05D000526 ORTHO05D000956 4.4e-06 57.8 59 40.7


User provided reference genes

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