Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 0.0e+00 1243.8 629 100.0
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 0.0e+00 1127.1 632 91.6
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 0.0e+00 1076.2 631 88.1
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 1.3e-303 1045.8 640 84.7
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 1.6e-269 932.6 637 77.6
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 6.0e-248 860.9 640 74.5
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 2.2e-242 842.4 633 73.3
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 1.3e-229 800.0 633 69.2
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 3.2e-225 785.4 643 69.8
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 4.7e-224 781.6 644 68.5
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 7.2e-217 757.7 644 68.8
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 4.1e-188 662.1 632 58.1
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 5.0e-186 655.2 642 57.6
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 1.6e-179 633.6 639 56.0
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 6.0e-179 631.7 632 57.6
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 6.6e-178 628.2 639 56.7
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 1.3e-173 614.0 640 55.9
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 1.3e-173 614.0 637 56.0
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 6.4e-173 611.7 661 54.5
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 3.5e-171 605.9 639 54.3
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 1.9e-169 600.1 672 52.8
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 2.1e-168 596.7 690 51.4
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 6.2e-168 595.1 637 53.5
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 5.2e-167 592.0 652 54.0
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.1e-164 584.3 640 53.8
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.9e-164 583.6 641 53.7
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 9.2e-164 581.3 638 53.6
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 1.6e-163 580.5 639 52.9
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 2.1e-163 580.1 648 53.2
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 4.6e-163 578.9 638 55.0
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 4.7e-160 568.9 637 52.6
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 3.8e-157 559.3 644 52.5
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 5.4e-156 555.4 644 50.8
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 2.7e-155 553.1 637 52.3
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 4.6e-155 552.4 638 52.0
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 6.6e-154 548.5 635 52.1
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 6.6e-154 548.5 635 52.1
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.6e-152 543.9 637 52.3
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.4e-151 540.0 658 49.8
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 2.4e-151 540.0 653 50.5
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 7.9e-147 525.0 642 49.2
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 6.2e-144 515.4 640 50.8
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 1.7e-141 507.3 633 50.1
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 2.9e-141 506.5 656 48.5
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 1.1e-137 494.6 653 48.2
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 2.5e-137 493.4 652 48.3
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 2.1e-136 490.3 654 47.4
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.1e-135 488.0 653 48.1
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 5.3e-135 485.7 655 48.5
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 7.6e-134 481.9 656 47.6
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 3.8e-133 479.6 651 46.5
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 6.5e-133 478.8 652 46.9
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 5.5e-132 475.7 648 50.2
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.2e-131 474.6 643 47.9
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 1.8e-127 460.7 652 46.6
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 2.4e-127 460.3 696 44.5
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 4.1e-127 459.5 688 47.4
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 4.1e-127 459.5 652 46.6
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 5.3e-127 459.1 655 44.6
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 6.9e-127 458.8 642 47.4
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 1.0e-125 454.9 654 44.6
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 2.9e-125 453.4 659 45.5
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 3.8e-125 453.0 563 49.4
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 5.0e-125 452.6 644 45.5
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 6.5e-125 452.2 662 46.2
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.1e-124 451.4 632 46.7
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 7.9e-123 445.3 658 45.3
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 7.9e-123 445.3 641 46.8
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 3.0e-122 443.4 674 44.5
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 5.1e-122 442.6 445 56.4
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 1.1e-121 441.4 637 45.4
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 5.7e-121 439.1 654 45.7
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 2.4e-119 433.7 498 52.6
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 2.4e-119 433.7 600 47.2
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 1.4e-116 424.5 647 45.7
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 2.5e-116 423.7 649 45.1
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 3.6e-115 419.9 535 47.9
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 3.0e-114 416.8 678 42.6
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 3.0e-114 416.8 657 43.8
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 8.8e-114 415.2 657 43.7
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 7.4e-113 412.1 641 44.1
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 2.8e-112 410.2 639 45.2
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.2e-109 400.6 503 48.1
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 3.2e-108 396.7 536 45.7
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 1.8e-106 391.0 620 43.7
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 2.6e-105 387.1 659 44.3
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 3.3e-105 386.7 634 42.6
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 3.3e-105 386.7 653 43.2
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 5.7e-105 386.0 480 50.0
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 1.2e-102 378.3 660 39.5
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 1.6e-102 377.9 642 43.5
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.5e-97 361.3 670 41.8
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 6.3e-96 355.9 441 49.0
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 6.1e-91 339.3 638 40.3
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 2.3e-90 337.4 597 41.9
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 8.8e-90 335.5 645 41.1
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.8e-88 330.5 475 45.9
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 6.3e-88 329.3 714 37.0
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 5.9e-86 322.8 509 44.4
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 3.8e-85 320.1 645 39.8
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 1.9e-84 317.8 646 38.9
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 9.5e-84 315.5 652 39.6
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 2.1e-83 314.3 641 40.6
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 3.4e-81 307.0 641 40.1
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 4.4e-81 306.6 636 39.0
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 7.5e-81 305.8 641 40.2
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 7.5e-81 305.8 771 34.6
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 4.9e-80 303.1 359 52.4
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 4.9e-80 303.1 638 40.1
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 1.8e-79 301.2 636 39.6
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 2.4e-79 300.8 659 37.8
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 4.1e-79 300.1 451 43.0
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 9.2e-79 298.9 627 37.6
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 4.5e-78 296.6 651 39.3
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 2.9e-77 293.9 703 35.7
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 3.8e-77 293.5 625 39.7
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 8.6e-77 292.4 642 38.5
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 8.9e-66 255.8 440 41.1
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 6.2e-59 233.0 466 39.3
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 1.3e-56 225.3 438 39.7
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 2.3e-53 214.5 739 34.1
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 4.3e-52 210.3 629 31.2
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 2.0e-49 201.4 670 32.1
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 7.6e-49 199.5 144 71.5
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.3e-48 198.7 164 65.9
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 2.3e-45 188.0 650 32.3
Cpa.g.sc81.1 Carica papaya HOM05D005409 ORTHO05D006456 1.1e-44 185.7 196 56.1
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 1.1e-42 179.1 251 48.2
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 1.7e-32 145.2 724 27.8
Haze_06667 Corylus avellana HOM05D005409 ORTHO05D006456 3.4e-25 120.9 186 41.9
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 6.7e-21 106.7 965 25.5
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 5.6e-20 103.6 441 31.3
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 6.2e-19 100.1 932 25.8
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 1.1e-18 99.4 135 48.9
Atru.chr6.3115 Acer truncatum HOM05D005409 ORTHO05D006456 3.4e-17 94.4 195 39.5
QL05p012359 Quercus lobata HOM05D005409 ORTHO05D006456 5.5e-15 87.0 116 45.7
Actinidia26960 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.3e-13 81.6 87 56.3
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 6.7e-13 80.1 137 40.1
SEGI_29006 Sequoiadendron giganteum HOM05D005409 ORTHO05D006456 1.1e-07 62.8 253 32.0
CAN.G466.8 Capsicum annuum HOM05D005409 ORTHO05D006456 4.6e-06 57.4 81 42.0


User provided reference genes

Program Settings