Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 3.5e-46 188.0 96 100.0
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 2.5e-36 155.2 99 83.8
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 1.6e-27 125.9 94 69.1
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 2.8e-27 125.2 93 71.0
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 4.7e-27 124.4 92 72.8
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 6.2e-27 124.0 92 72.8
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 8.0e-27 123.6 92 72.8
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 1.1e-26 123.2 92 72.8
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 1.8e-26 122.5 82 72.0
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 8.9e-26 120.2 92 69.6
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 1.5e-25 119.4 94 67.0
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 2.0e-25 119.0 101 65.3
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 7.5e-25 117.1 95 67.4
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 7.5e-25 117.1 95 67.4
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 7.5e-25 117.1 92 65.2
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 1.3e-24 116.3 90 66.7
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 1.3e-24 116.3 92 67.4
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 1.7e-24 115.9 92 69.6
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 1.7e-24 115.9 92 66.3
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 2.2e-24 115.5 76 72.4
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 2.9e-24 115.2 95 66.3
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 3.7e-24 114.8 96 65.6
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 3.7e-24 114.8 92 67.4
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 8.3e-24 113.6 90 65.6
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 8.3e-24 113.6 94 67.0
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 1.4e-23 112.8 92 66.3
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 1.4e-23 112.8 94 67.0
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 1.4e-23 112.8 88 65.9
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 1.4e-23 112.8 95 66.3
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 1.9e-23 112.5 92 66.3
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 1.9e-23 112.5 95 66.3
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 9.2e-23 110.2 98 62.2
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 9.2e-23 110.2 83 69.9
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 9.2e-23 110.2 92 63.0
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 1.6e-22 109.4 92 64.1
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 2.1e-22 109.0 92 65.2
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 2.1e-22 109.0 92 64.1
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 4.6e-22 107.8 92 64.1
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 4.6e-22 107.8 92 64.1
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 4.6e-22 107.8 92 64.1
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.0e-21 106.7 92 62.0
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.3e-21 106.3 92 62.0
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 1.7e-21 105.9 92 63.0
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 1.7e-21 105.9 99 62.6
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.7e-21 105.9 92 62.0
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 3.0e-21 105.1 92 64.1
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 3.0e-21 105.1 96 63.5
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 3.9e-21 104.8 94 62.8
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 5.1e-21 104.4 94 58.5
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 5.1e-21 104.4 92 62.0
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 6.6e-21 104.0 92 63.0
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 6.6e-21 104.0 92 57.6
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 8.6e-21 103.6 92 57.6
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 8.6e-21 103.6 92 63.0
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.1e-20 103.2 94 58.5
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.5e-20 102.8 92 57.6
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.5e-20 102.8 92 57.6
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 1.5e-20 102.8 98 62.2
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 2.5e-20 102.1 98 57.1
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.5e-20 102.1 94 57.4
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 2.5e-20 102.1 94 57.4
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 2.5e-20 102.1 86 61.6
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 3.3e-20 101.7 95 58.9
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 4.3e-20 101.3 93 59.1
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 4.3e-20 101.3 74 60.8
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 9.5e-20 100.1 94 56.4
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 1.2e-19 99.8 94 61.7
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 1.2e-19 99.8 95 57.9
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 2.8e-19 98.6 96 62.5
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 3.6e-19 98.2 82 67.1
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 3.6e-19 98.2 98 57.1
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 4.7e-19 97.8 83 66.3
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 6.2e-19 97.4 98 52.0
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 6.2e-19 97.4 85 58.8
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 1.1e-18 96.7 74 67.6
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 1.1e-18 96.7 94 60.6
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 3.1e-18 95.1 100 55.0
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 8.9e-18 93.6 101 53.5
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 8.9e-18 93.6 99 51.5
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 1.5e-17 92.8 102 52.9
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 1.5e-17 92.8 84 58.3
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 3.4e-17 91.7 88 59.1
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 4.4e-17 91.3 92 57.6
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 5.8e-17 90.9 100 54.0
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 5.8e-17 90.9 94 59.6
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 7.6e-17 90.5 104 53.8
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 7.6e-17 90.5 88 56.8
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 9.9e-17 90.1 102 50.0
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 9.9e-17 90.1 70 67.1
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 9.9e-17 90.1 99 50.5
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 1.3e-16 89.7 82 59.8
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 1.7e-16 89.4 101 50.5
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 2.2e-16 89.0 84 54.8
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 2.2e-16 89.0 84 57.1
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 2.2e-16 89.0 98 54.1
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.2e-16 89.0 85 57.6
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 2.9e-16 88.6 101 50.5
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 3.7e-16 88.2 76 57.9
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 3.7e-16 88.2 102 52.9
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 6.4e-16 87.4 99 50.5
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 6.4e-16 87.4 88 56.8
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 1.1e-15 86.7 87 60.9
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 1.4e-15 86.3 94 53.2
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.9e-15 85.9 80 56.2
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 1.9e-15 85.9 82 57.3
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.9e-15 85.9 82 57.3
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 1.9e-15 85.9 101 48.5
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 3.2e-15 85.1 83 59.0
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 4.1e-15 84.7 98 53.1
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 4.1e-15 84.7 88 54.5
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 7.1e-15 84.0 85 54.1
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 9.2e-15 83.6 94 54.3
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 9.2e-15 83.6 97 54.6
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.2e-14 83.2 83 54.2
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 1.2e-14 83.2 83 56.6
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 1.6e-14 82.8 79 55.7
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 1.6e-14 82.8 99 50.5
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.6e-14 82.8 92 47.8
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.6e-14 82.8 92 46.7
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 1.6e-14 82.8 88 54.5
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 2.1e-14 82.4 76 57.9
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 2.1e-14 82.4 99 47.5
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 2.7e-14 82.0 91 52.7
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 3.5e-14 81.6 91 51.6
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 3.5e-14 81.6 83 55.4
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 4.6e-14 81.3 91 51.6
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 6.0e-14 80.9 92 46.7
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 7.8e-14 80.5 94 54.3
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 1.3e-13 79.7 93 52.7
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 1.3e-13 79.7 93 52.7
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 1.7e-13 79.3 93 52.7
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.7e-13 79.3 80 52.5
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 1.7e-13 79.3 102 51.0
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 2.3e-13 79.0 99 45.5
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 2.3e-13 79.0 94 52.1
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 2.3e-13 79.0 94 52.1
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 2.3e-13 79.0 94 52.1
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 5.1e-13 77.8 93 51.6
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 6.6e-13 77.4 93 49.5
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 6.6e-13 77.4 93 51.6
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 8.6e-13 77.0 91 49.5
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 8.6e-13 77.0 94 54.3
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 1.1e-12 76.6 94 50.0
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 1.1e-12 76.6 94 51.1
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 1.1e-12 76.6 94 50.0
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 1.1e-12 76.6 94 51.1
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.5e-12 76.3 86 53.5
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 1.9e-12 75.9 90 48.9
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 2.5e-12 75.5 99 43.4
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 2.5e-12 75.5 94 50.0
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 5.6e-12 74.3 89 47.2
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 9.6e-12 73.6 93 49.5
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 1.2e-11 73.2 98 45.9
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 1.6e-11 72.8 89 48.3
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.6e-11 72.8 89 48.3
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 2.1e-11 72.4 98 45.9
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 2.8e-11 72.0 79 54.4
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 3.6e-11 71.6 66 62.1
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 6.2e-11 70.9 93 48.4
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 6.2e-11 70.9 58 60.3
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 8.1e-11 70.5 75 53.3
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 8.1e-11 70.5 89 47.2
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 8.1e-11 70.5 93 48.4
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 8.1e-11 70.5 89 47.2
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 8.1e-11 70.5 68 54.4
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 8.9e-10 67.0 62 61.3
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 1.2e-09 66.6 94 47.9
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 1.2e-09 66.6 94 47.9
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.2e-09 66.6 94 47.9
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 2.0e-09 65.9 78 52.6
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 3.4e-09 65.1 94 47.9
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 3.4e-09 65.1 94 47.9
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 3.4e-09 65.1 74 47.3
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 1.3e-08 63.2 51 52.9
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 1.3e-08 63.2 94 46.8
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 1.3e-08 63.2 63 55.6
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 1.7e-08 62.8 76 52.6
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 3.8e-08 61.6 78 51.3
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 3.8e-08 61.6 78 51.3
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 3.8e-08 61.6 78 51.3
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 1.1e-07 60.1 72 52.8
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 1.1e-07 60.1 72 52.8
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 5.4e-07 57.8 52 50.0
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 5.4e-07 57.8 52 50.0
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 7.1e-07 57.4 72 50.0
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 7.8e-06 53.9 55 60.0


User provided reference genes

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