Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1979.9 1015 100.0
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1908.3 1009 96.9
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1873.6 1008 94.9
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1872.1 1008 94.9
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1802.7 1008 90.9
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1801.9 1008 90.9
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1801.6 1008 90.7
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1787.3 1008 90.0
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1772.7 1008 89.3
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1751.1 1009 88.6
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1748.8 1008 88.5
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1723.0 1008 87.3
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1612.8 1010 80.5
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1612.4 1010 80.1
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1607.8 1010 80.0
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1593.9 1011 79.0
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1590.9 1010 80.2
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1588.2 1010 78.9
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1584.3 1009 78.5
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1580.1 1010 78.7
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1579.3 1009 78.5
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1565.8 1010 77.4
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1563.1 1010 77.4
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1559.7 1010 77.2
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1557.3 1010 77.0
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1557.0 1007 78.0
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1556.2 1013 77.0
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1556.2 1039 75.6
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1555.8 1008 77.1
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1553.9 1007 77.9
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1539.2 1014 76.7
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1538.5 1014 76.6
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1538.1 1008 75.8
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1535.0 1009 75.9
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1531.2 1009 74.9
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1531.2 1009 75.4
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1527.3 1009 75.5
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1524.2 1009 75.1
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1523.1 1009 75.8
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1521.5 1009 74.9
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1521.5 1009 74.8
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1520.8 1009 74.9
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1519.2 1009 74.6
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1518.8 1010 75.0
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1518.4 1010 75.0
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1513.4 1010 75.3
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1513.0 1015 75.3
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1508.0 1010 74.6
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1505.7 1010 74.3
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1504.6 1009 74.6
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1495.3 1009 74.9
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1490.7 1011 75.0
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1489.9 1013 74.4
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1484.5 1009 73.5
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1483.8 1013 73.8
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1483.4 1010 73.5
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1481.1 1010 73.0
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1479.2 1013 73.8
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1477.2 1009 73.7
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1472.6 1071 70.2
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1463.7 1081 69.2
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1459.9 1009 72.9
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1459.9 1009 74.0
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1457.2 1016 71.1
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1456.8 1010 74.5
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1453.0 1010 72.9
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1451.0 1008 73.0
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1449.5 914 80.1
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1448.7 1025 71.0
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1442.6 1009 72.0
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1441.4 1042 70.2
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1438.7 999 73.0
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1436.0 1009 71.6
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1434.5 1011 69.8
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1429.5 914 78.1
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1428.3 1009 70.9
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1424.5 1092 68.7
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1424.5 1009 70.7
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1419.8 1144 65.1
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1416.0 1025 71.8
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1408.7 992 72.9
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1408.3 1066 68.2
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1394.4 1029 72.1
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1382.1 1010 69.5
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1348.6 896 73.9
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1335.1 1028 66.6
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1323.5 1010 67.5
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1301.6 961 68.3
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1283.9 1016 63.8
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1282.3 1017 64.8
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1281.9 999 66.6
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1274.2 834 75.2
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1248.4 1016 62.6
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1187.9 1016 60.9
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1181.4 877 70.1
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 0.0e+00 1151.7 964 60.6
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 1.4e-307 1059.7 882 58.6
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 6.0e-306 1054.3 822 66.8
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 2.9e-292 1008.8 726 70.4
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 3.8e-292 1008.4 611 80.2
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 5.8e-285 984.6 1026 49.9
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 2.2e-284 982.6 611 78.4
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 1.3e-281 973.4 704 70.5
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 2.0e-277 959.5 1018 49.5
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 3.8e-276 955.3 1017 49.4
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 1.7e-255 886.7 617 72.3
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 1.6e-250 870.2 991 47.3
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 1.6e-237 827.0 537 76.2
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 2.7e-237 826.2 508 80.7
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 2.3e-236 823.2 1038 43.2
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 9.5e-235 817.8 507 78.9
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 5.4e-230 802.0 507 77.9
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 7.8e-221 771.5 502 78.3
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 3.5e-213 746.1 1021 41.3
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 2.3e-196 690.3 1015 41.9
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 4.8e-186 656.0 484 72.1
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 9.0e-161 572.0 393 75.8
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 7.7e-152 542.3 303 90.8
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 4.7e-141 506.5 545 51.9
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 2.3e-140 504.2 280 96.8
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 5.4e-129 466.5 411 60.1
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 1.6e-128 464.9 1044 30.4
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.6e-125 454.9 390 59.0
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 3.7e-122 443.7 384 63.3
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 3.3e-118 430.6 404 57.4
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 1.0e-116 425.6 309 71.8
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 3.5e-104 384.0 469 50.3
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 7.8e-104 382.9 1161 27.0
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 1.5e-99 368.6 232 85.8
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 8.1e-85 319.7 302 54.0
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-75 287.3 310 46.8
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 1.0e-71 276.2 213 65.3
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 8.7e-63 246.5 141 83.7
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 5.6e-62 243.8 126 100.0
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 1.8e-60 238.8 216 61.1
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 7.6e-51 206.8 177 57.6
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 3.6e-40 171.4 129 65.9
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 5.7e-38 164.1 132 67.4
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 3.9e-31 141.4 179 47.5
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 2.0e-30 139.0 88 73.9
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 4.4e-30 137.9 84 81.0
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 7.0e-28 130.6 78 83.3
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 5.5e-25 120.9 68 88.2
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 9.4e-25 120.2 79 74.7
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 1.2e-24 119.8 91 62.6
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 4.7e-24 117.9 92 65.2
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 4.7e-24 117.9 182 36.8
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 1.8e-23 115.9 76 71.1
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 2.8e-21 108.6 121 50.4
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 2.0e-19 102.4 95 58.9
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 4.2e-17 94.7 131 45.8
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 6.8e-15 87.4 80 55.0
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 4.4e-14 84.7 57 68.4
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 6.3e-13 80.9 99 44.4
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 2.7e-11 75.5 562 21.2
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 2.3e-10 72.4 57 66.7
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 3.8e-10 71.6 45 73.3
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 3.8e-10 71.6 39 84.6
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 1.9e-09 69.3 174 29.3
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 5.5e-09 67.8 121 34.7
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 1.2e-08 66.6 47 70.2
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 2.1e-08 65.9 121 33.9
Cfa026283 Carpinus fangiana HOM05D002786 ORTHO05D003493 3.6e-08 65.1 141 25.5
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 8.0e-08 63.9 161 33.5
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.0e-07 63.5 44 61.4
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 1.4e-07 63.2 129 28.7
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 1.4e-07 63.2 129 28.7
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 1.4e-07 63.2 121 33.1
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 5.2e-07 61.2 126 32.5
ECA233G2610 Erigeron canadensis HOM05D002786 ORTHO05D003493 5.2e-07 61.2 192 24.5
Ah.02g115110 Amaranthus hybridus HOM05D002786 ORTHO05D003493 1.5e-06 59.7 153 27.5
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 2.0e-06 59.3 173 26.0
MBI07_g00622_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D003493 3.4e-06 58.5 153 27.5
Oeu013400.2 Olea europaea HOM05D002786 ORTHO05D010194 3.4e-06 58.5 186 25.8
ATR0609G059 Amborella trichopoda HOM05D002786 ORTHO05D003493 4.4e-06 58.2 150 25.3
Ah.12g062150 Amaranthus hybridus HOM05D002786 ORTHO05D003493 5.7e-06 57.8 164 25.6
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 5.7e-06 57.8 181 26.0
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 9.8e-06 57.0 137 26.3
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 9.8e-06 57.0 137 26.3


User provided reference genes

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