Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 2.5e-248 861.7 440 100.0
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 5.7e-229 797.3 439 92.9
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 6.6e-225 783.9 438 92.0
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 1.6e-202 709.5 438 81.3
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 4.3e-200 701.4 457 78.3
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 1.8e-190 669.5 442 79.0
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 3.2e-187 658.7 440 77.7
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 8.7e-185 650.6 441 77.3
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 7.3e-184 647.5 442 77.8
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.3e-183 646.7 441 76.2
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 2.1e-183 646.0 441 78.7
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 2.1e-170 602.8 394 77.9
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 7.7e-157 557.8 321 88.2
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 9.4e-155 550.8 496 61.9
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 5.3e-150 535.0 496 59.7
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 2.6e-149 532.7 498 60.0
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 1.2e-138 497.3 482 58.1
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 1.0e-137 494.2 487 57.9
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.4e-137 493.8 488 57.0
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 1.4e-137 493.8 497 57.9
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 2.6e-136 489.6 358 73.5
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 2.0e-133 479.9 486 56.8
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 4.5e-133 478.8 477 55.8
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 1.0e-132 477.6 485 54.6
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.7e-132 476.9 485 57.7
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 2.9e-132 476.1 468 57.7
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.9e-132 476.1 477 57.4
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 6.5e-132 474.9 479 57.0
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 2.5e-131 473.0 496 55.2
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 7.2e-131 471.5 500 56.0
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.6e-130 470.3 500 56.4
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 3.6e-130 469.2 486 56.0
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 4.7e-130 468.8 491 55.8
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 3.0e-129 466.1 491 55.4
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 3.0e-129 466.1 498 56.4
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 1.5e-128 463.8 460 57.0
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 4.8e-127 458.8 489 52.8
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 1.4e-126 457.2 449 58.4
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 2.4e-126 456.4 491 52.1
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.6e-125 453.8 474 57.0
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.3e-124 450.7 522 53.6
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 1.7e-124 450.3 476 55.5
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 8.5e-124 448.0 393 62.8
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 7.2e-123 444.9 474 55.7
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.2e-123 444.9 474 55.7
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.2e-123 444.9 474 55.7
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.2e-123 444.9 474 55.7
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 2.3e-121 439.9 471 54.6
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 8.8e-121 438.0 383 62.4
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.2e-120 437.6 443 54.6
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.5e-120 437.2 494 52.4
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.6e-120 436.4 474 55.1
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 2.6e-120 436.4 501 51.9
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 4.4e-120 435.6 444 54.5
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.5e-120 434.9 444 57.4
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 2.2e-119 433.3 489 54.4
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 1.1e-118 431.0 502 53.0
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 7.7e-117 424.9 500 51.4
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.0e-116 424.5 372 61.8
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.0e-116 424.5 420 57.1
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 5.5e-115 418.7 517 51.5
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 9.5e-115 417.9 382 59.9
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 1.2e-114 417.5 450 56.2
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 7.5e-112 408.3 497 49.9
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 1.8e-110 403.7 438 52.1
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 2.9e-108 396.4 517 49.7
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 2.9e-108 396.4 501 48.7
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 8.6e-108 394.8 500 50.4
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 1.5e-107 394.0 514 47.9
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.6e-106 390.6 470 53.4
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 1.4e-105 387.5 481 50.1
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 3.1e-105 386.3 486 50.4
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.2e-104 384.4 432 54.2
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.5e-104 384.0 382 56.8
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 3.4e-104 382.9 593 45.0
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 4.4e-104 382.5 407 55.0
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 3.7e-103 379.4 489 50.7
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 4.6e-101 372.5 449 51.7
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 5.0e-100 369.0 451 49.7
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 4.3e-99 365.9 441 52.2
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 4.7e-98 362.5 470 48.7
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 2.7e-93 346.7 447 47.9
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 7.8e-93 345.1 206 86.4
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 6.6e-92 342.0 399 54.9
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 3.6e-90 336.3 446 47.3
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 2.3e-89 333.6 386 51.0
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 4.0e-89 332.8 385 50.6
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 1.3e-87 327.8 451 46.1
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 2.2e-87 327.0 432 48.1
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 1.1e-86 324.7 408 47.3
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 4.1e-86 322.8 320 59.1
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 7.8e-85 318.5 448 46.2
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 5.1e-84 315.8 450 45.6
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 2.5e-83 313.5 482 43.6
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 4.3e-83 312.8 404 49.8
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 9.6e-83 311.6 446 46.0
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 2.1e-82 310.5 445 46.1
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 2.8e-82 310.1 498 42.2
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 2.6e-80 303.5 376 50.8
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 3.8e-79 299.7 385 49.4
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 6.4e-79 298.9 456 45.4
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 6.4e-79 298.9 455 44.2
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 3.2e-78 296.6 442 43.0
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 7.1e-78 295.4 449 43.9
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 1.3e-76 291.2 444 45.5
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 2.3e-76 290.4 307 54.1
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 5.1e-76 289.3 443 44.0
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 6.6e-76 288.9 443 44.0
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 1.2e-72 278.1 454 46.3
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 1.3e-71 274.6 382 49.5
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 4.6e-69 266.2 385 47.3
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.7e-68 264.2 384 44.8
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.1e-67 261.5 419 43.4
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 2.5e-67 260.4 441 46.9
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 4.3e-67 259.6 431 44.8
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 3.6e-66 256.5 472 39.4
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 9.9e-64 248.4 449 39.4
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 2.3e-60 237.3 269 52.4
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.4e-57 228.0 385 41.0
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 5.3e-57 226.1 223 54.3
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 1.3e-55 221.5 232 52.2
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 5.5e-54 216.1 346 43.9
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 4.8e-50 203.0 423 40.0
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 5.3e-49 199.5 230 47.0
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 2.5e-43 180.6 108 81.5
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 2.5e-43 180.6 245 42.4
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.8e-36 157.9 345 34.8
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 3.3e-35 153.7 361 35.7
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 1.3e-31 141.7 238 36.6
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.1e-30 138.7 223 38.1
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.8e-28 131.3 223 36.8
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 4.4e-27 126.7 333 33.3
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 4.1e-25 120.2 85 72.9
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 1.6e-24 118.2 111 45.0
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.9e-23 114.0 436 28.9
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 4.2e-22 110.2 208 41.3
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 6.7e-20 102.8 68 75.0
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 1.5e-14 85.1 148 38.5
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 1.3e-07 62.0 52 67.3


User provided reference genes

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