Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G144000 Glycine max HOM05D000311 ORTHO05D000183 3.6e-54 214.5 99 100.0
Glyma.07G143500 Glycine max HOM05D000311 ORTHO05D000183 1.8e-37 159.1 101 78.2
Glyma.07G144100 Glycine max HOM05D000311 ORTHO05D000183 1.8e-34 149.1 100 73.0
Glyma.18G195200 Glycine max HOM05D000311 ORTHO05D000183 5.7e-28 127.5 105 64.8
Glyma.18G273000 Glycine max HOM05D000311 ORTHO05D000183 6.6e-24 114.0 102 57.8
VMungo0331G1986 Vigna mungo HOM05D000311 ORTHO05D000183 4.3e-23 111.3 99 54.5
Medtr0474s0020 Medicago truncatula HOM05D000311 ORTHO05D000183 1.8e-21 105.9 92 52.2
Ca_09166_v3 Cicer arietinum L. HOM05D000311 ORTHO05D000183 8.9e-21 103.6 97 49.5
TPR.G2115 Trifolium pratense HOM05D000311 ORTHO05D000183 1.5e-20 102.8 101 50.5
Phvul.008G108400 Phaseolus vulgaris HOM05D000311 ORTHO05D000183 2.6e-20 102.1 99 50.5
VMungo1383G1887 Vigna mungo HOM05D000311 ORTHO05D000183 5.8e-20 100.9 108 47.2
VMungo0720G1122 Vigna mungo HOM05D000311 ORTHO05D000183 9.8e-20 100.1 95 57.9
Phvul.008G109200 Phaseolus vulgaris HOM05D000311 ORTHO05D000183 1.3e-19 99.8 94 60.6
Phvul.008G111700 Phaseolus vulgaris HOM05D000311 ORTHO05D000183 6.4e-19 97.4 93 57.0
Phvul.008G109000 Phaseolus vulgaris HOM05D000311 ORTHO05D000183 1.9e-18 95.9 105 47.6
Phvul.004G142700 Phaseolus vulgaris HOM05D000311 ORTHO05D000183 4.1e-18 94.7 80 60.0
VMungo1127G2119 Vigna mungo HOM05D000311 ORTHO05D000183 4.1e-18 94.7 76 56.6
TPR.G40816 Trifolium pratense HOM05D000311 ORTHO05D000183 9.2e-18 93.6 80 52.5
Lj1g0002881 Lotus japonicus HOM05D000311 ORTHO05D000183 1.2e-17 93.2 92 48.9
Medtr7g066600 Medicago truncatula HOM05D000311 ORTHO05D000183 7.8e-17 90.5 99 42.4
arahy.Tifrunner.gnm1.ann1.LKDD8T Arachis hypogaea HOM05D000311 ORTHO05D000183 5.0e-16 87.8 94 44.7
Phvul.008G111800 Phaseolus vulgaris HOM05D000311 ORTHO05D000183 5.6e-15 84.3 101 43.6
VMungo0720G0904 Vigna mungo HOM05D000311 ORTHO05D000183 5.6e-15 84.3 92 52.2
Medtr7g066640 Medicago truncatula HOM05D000311 ORTHO05D000183 6.2e-14 80.9 86 41.9
arahy.Tifrunner.gnm1.ann1.1M4EYD Arachis hypogaea HOM05D000311 ORTHO05D000183 3.1e-13 78.6 110 40.9
arahy.Tifrunner.gnm1.ann1.EPVS88 Arachis hypogaea HOM05D000311 ORTHO05D000183 3.1e-13 78.6 110 40.9
Duzib150G0385 Durio zibethinus HOM05D000311 ORTHO05D000183 2.4e-10 68.9 88 42.0
Gohir.A10G141500 Gossypium hirsutum HOM05D000311 ORTHO05D000183 2.4e-10 68.9 81 38.3
Gorai.011G138200 Gossypium raimondii HOM05D000311 ORTHO05D000183 2.4e-10 68.9 84 39.3
Duzib132G0591 Durio zibethinus HOM05D000311 ORTHO05D000183 3.2e-10 68.6 93 38.7
Nitab4.5_0003058g0020 Nicotiana tabacum HOM05D000311 ORTHO05D000183 3.2e-10 68.6 92 40.2
TWI34G0418 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 3.2e-10 68.6 95 40.0
Gohir.D10G125000 Gossypium hirsutum HOM05D000311 ORTHO05D000183 5.4e-10 67.8 94 41.5
Gorai.011G138100 Gossypium raimondii HOM05D000311 ORTHO05D000183 5.4e-10 67.8 94 41.5
Gohir.D10G225865 Gossypium hirsutum HOM05D000311 ORTHO05D000183 7.1e-10 67.4 82 36.6
Peaxi162Scf00305g00618 Petunia axillaris HOM05D000311 ORTHO05D000183 9.2e-10 67.0 100 35.0
Thecc.02G158500 Theobroma cacao HOM05D000311 ORTHO05D000183 1.2e-09 66.6 103 40.8
Duzib150G0424 Durio zibethinus HOM05D000311 ORTHO05D000183 1.6e-09 66.2 86 41.9
Nitab4.5_0006816g0050 Nicotiana tabacum HOM05D000311 ORTHO05D000183 1.6e-09 66.2 89 36.0
TWI34G1250 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 1.6e-09 66.2 84 36.9
Gohir.A04G108700 Gossypium hirsutum HOM05D000311 ORTHO05D000183 4.6e-09 64.7 89 41.6
COL.COLO4_33049 Corchorus olitorius HOM05D000311 ORTHO05D000183 6.0e-09 64.3 105 39.0
Eucgr.C04071 Eucalyptus grandis HOM05D000311 ORTHO05D000183 6.0e-09 64.3 84 40.5
Gorai.012G134500 Gossypium raimondii HOM05D000311 ORTHO05D000183 6.0e-09 64.3 83 39.8
Gohir.A05G389900 Gossypium hirsutum HOM05D000311 ORTHO05D000183 1.0e-08 63.5 106 35.8
Gorai.011G257100 Gossypium raimondii HOM05D000311 ORTHO05D000183 1.3e-08 63.2 85 37.6
Thecc.10G150200 Theobroma cacao HOM05D000311 ORTHO05D000183 1.7e-08 62.8 97 39.2
TWI34G0320 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 1.7e-08 62.8 95 35.8
Atru.chr12.2416 Acer truncatum HOM05D000311 ORTHO05D000183 2.3e-08 62.4 83 44.6
Actinidia26343 Actinidia chinensis HOM05D000311 ORTHO05D000183 2.3e-08 62.4 103 35.9
Duzib150G0699 Durio zibethinus HOM05D000311 ORTHO05D000183 2.3e-08 62.4 91 38.5
Thecc.06G013900 Theobroma cacao HOM05D000311 ORTHO05D000183 3.0e-08 62.0 91 40.7
Thecc.06G014200 Theobroma cacao HOM05D000311 ORTHO05D000183 3.9e-08 61.6 95 41.1
TWI32G0359 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 3.9e-08 61.6 98 36.7
Gohir.D04G148250 Gossypium hirsutum HOM05D000311 ORTHO05D000183 5.1e-08 61.2 90 40.0
QL04p003852 Quercus lobata HOM05D000311 ORTHO05D000183 5.1e-08 61.2 96 37.5
vmacro07752 Vaccinium macrocarpon HOM05D000311 ORTHO05D000183 5.1e-08 61.2 89 40.4
Gohir.D13G208066 Gossypium hirsutum HOM05D000311 ORTHO05D000183 6.6e-08 60.8 101 35.6
CSS0030458 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 8.6e-08 60.5 105 34.3
COL.COLO4_33047 Corchorus olitorius HOM05D000311 ORTHO05D000183 8.6e-08 60.5 97 41.2
Duzib160G0087 Durio zibethinus HOM05D000311 ORTHO05D000183 8.6e-08 60.5 104 33.7
Duzib160G0191 Durio zibethinus HOM05D000311 ORTHO05D000183 8.6e-08 60.5 106 33.0
Gorai.013G237100 Gossypium raimondii HOM05D000311 ORTHO05D000183 8.6e-08 60.5 101 35.6
Rhsim01G0054100 Rhododendron simsii HOM05D000311 ORTHO05D000183 8.6e-08 60.5 111 34.2
TWI34G1007 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 8.6e-08 60.5 96 36.5
Nitab4.5_0000201g0250 Nicotiana tabacum HOM05D000311 ORTHO05D000183 1.1e-07 60.1 110 30.9
Sabra05G0004000 Salix brachista HOM05D000311 ORTHO05D000183 1.1e-07 60.1 98 35.7
Sabra05G0004300 Salix brachista HOM05D000311 ORTHO05D000183 1.1e-07 60.1 98 35.7
Sabra05G0017500 Salix brachista HOM05D000311 ORTHO05D000183 1.1e-07 60.1 98 35.7
Duzib080G0004 Durio zibethinus HOM05D000311 ORTHO05D000183 1.5e-07 59.7 104 32.7
Eucgr.C03330 Eucalyptus grandis HOM05D000311 ORTHO05D000183 1.5e-07 59.7 84 39.3
Peaxi162Scf01205g00183 Petunia axillaris HOM05D000311 ORTHO05D000183 1.5e-07 59.7 101 33.7
Rhsim01G0102000 Rhododendron simsii HOM05D000311 ORTHO05D000183 1.5e-07 59.7 90 38.9
Eucgr.C03265 Eucalyptus grandis HOM05D000311 ORTHO05D000183 1.9e-07 59.3 84 39.3
QL04p004471 Quercus lobata HOM05D000311 ORTHO05D000183 1.9e-07 59.3 92 37.0
Sabra05G0006100 Salix brachista HOM05D000311 ORTHO05D000183 1.9e-07 59.3 102 35.3
PGSC0003DMG400030149 Solanum tuberosum HOM05D000311 ORTHO05D000183 1.9e-07 59.3 100 35.0
TWI34G0630 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 1.9e-07 59.3 96 35.4
Atru.chr12.2392 Acer truncatum HOM05D000311 ORTHO05D000183 2.5e-07 58.9 113 40.7
CAN.G222.19 Capsicum annuum HOM05D000311 ORTHO05D000183 2.5e-07 58.9 87 36.8
Duzib190G0001 Durio zibethinus HOM05D000311 ORTHO05D000183 2.5e-07 58.9 113 32.7
Duzib212G0464 Durio zibethinus HOM05D000311 ORTHO05D000183 2.5e-07 58.9 99 43.4
Eucgr.C04416 Eucalyptus grandis HOM05D000311 ORTHO05D000183 2.5e-07 58.9 98 36.7
Eucgr.E04279 Eucalyptus grandis HOM05D000311 ORTHO05D000183 2.5e-07 58.9 81 38.3
Gohir.A13G202300 Gossypium hirsutum HOM05D000311 ORTHO05D000183 2.5e-07 58.9 99 35.4
Gohir.A13G202700 Gossypium hirsutum HOM05D000311 ORTHO05D000183 2.5e-07 58.9 98 36.7
Gohir.D08G053800 Gossypium hirsutum HOM05D000311 ORTHO05D000183 2.5e-07 58.9 95 37.9
Manes.04G022700 Manihot esculenta HOM05D000311 ORTHO05D000183 2.5e-07 58.9 94 40.4
QL04p004667 Quercus lobata HOM05D000311 ORTHO05D000183 2.5e-07 58.9 88 37.5
QL93p2015_0040 Quercus lobata HOM05D000311 ORTHO05D000183 2.5e-07 58.9 88 37.5
Thecc.09G137900 Theobroma cacao HOM05D000311 ORTHO05D000183 2.5e-07 58.9 81 40.7
Duzib212G0774 Durio zibethinus HOM05D000311 ORTHO05D000183 3.3e-07 58.5 105 37.1
Peaxi162Scf00305g00106 Petunia axillaris HOM05D000311 ORTHO05D000183 3.3e-07 58.5 78 38.5
Sabra05G0003900 Salix brachista HOM05D000311 ORTHO05D000183 3.3e-07 58.5 104 34.6
Sabra05G0017800 Salix brachista HOM05D000311 ORTHO05D000183 3.3e-07 58.5 104 33.7
Solyc08g016270.3 Solanum lycopersicum HOM05D000311 ORTHO05D000183 3.3e-07 58.5 101 34.7
TPR.G14786 Trifolium pratense HOM05D000071 ORTHO05D000029 3.3e-07 58.5 79 38.0
QL04p004418 Quercus lobata HOM05D000311 ORTHO05D000183 4.3e-07 58.2 84 38.1
TAR626G1355 Trochodendron aralioides HOM05D000311 ORTHO05D000183 4.3e-07 58.2 109 36.7
TAR626G1657 Trochodendron aralioides HOM05D000311 ORTHO05D000183 4.3e-07 58.2 111 36.0
VMungo1080G0730 Vigna mungo HOM05D000311 ORTHO05D000183 4.3e-07 58.2 54 51.9
Duzib187G0167 Durio zibethinus HOM05D000311 ORTHO05D000183 5.6e-07 57.8 53 41.5
Manes.06G044000 Manihot esculenta HOM05D000311 ORTHO05D000183 5.6e-07 57.8 81 40.7
Sabra05G0004600 Salix brachista HOM05D000311 ORTHO05D000183 7.3e-07 57.4 104 33.7
TWI14G0299 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 7.3e-07 57.4 103 35.0
TWI14G0374 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 7.3e-07 57.4 103 35.0
Eucgr.L01699 Eucalyptus grandis HOM05D000311 ORTHO05D000183 9.5e-07 57.0 84 38.1
Gohir.D02G026300 Gossypium hirsutum HOM05D000311 ORTHO05D000183 9.5e-07 57.0 97 38.1
Gorai.005G031800 Gossypium raimondii HOM05D000311 ORTHO05D000183 9.5e-07 57.0 97 38.1
Sabra05G0003500 Salix brachista HOM05D000311 ORTHO05D000183 9.5e-07 57.0 105 34.3
CSS0046305 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 1.2e-06 56.6 101 34.7
CANSAT11G2318 Cannabis sativa HOM05D000071 ORTHO05D000029 1.2e-06 56.6 71 38.0
Eucgr.E04289 Eucalyptus grandis HOM05D000311 ORTHO05D000183 1.2e-06 56.6 84 38.1
QL04p004305 Quercus lobata HOM05D000311 ORTHO05D000183 1.2e-06 56.6 60 43.3
QL04p004735 Quercus lobata HOM05D000311 ORTHO05D000183 1.2e-06 56.6 89 36.0
Actinidia23543 Actinidia chinensis HOM05D000311 ORTHO05D000183 1.6e-06 56.2 114 34.2
Duzib212G1037 Durio zibethinus HOM05D000311 ORTHO05D000183 1.6e-06 56.2 99 40.4
Potri.001G065300 Populus trichocarpa HOM05D000311 ORTHO05D000183 1.6e-06 56.2 85 40.0
QL04p003552 Quercus lobata HOM05D000311 ORTHO05D000183 1.6e-06 56.2 71 39.4
Actinidia38684 Actinidia chinensis HOM05D000311 ORTHO05D000183 2.1e-06 55.8 89 37.1
AT2G25470 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 2.1e-06 55.8 102 34.3
CSS0011623 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 2.1e-06 55.8 102 36.3
COL.COLO4_30958 Corchorus olitorius HOM05D000071 ORTHO05D000029 2.1e-06 55.8 65 43.1
Duzib149G0002 Durio zibethinus HOM05D000311 ORTHO05D000183 2.1e-06 55.8 99 41.4
Lsat_1_v5_gn_1_29701 Lactuca sativa HOM05D000311 ORTHO05D000183 2.1e-06 55.8 99 32.3
Nn2g12197 Nelumbo nucifera HOM05D000311 ORTHO05D000183 2.1e-06 55.8 97 33.0
QL04p004575 Quercus lobata HOM05D000311 ORTHO05D000183 2.1e-06 55.8 62 45.2
TWI34G1776 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 2.1e-06 55.8 82 36.6
Ciclev10018317m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.8e-06 55.5 72 36.1
Eucgr.E04267 Eucalyptus grandis HOM05D000311 ORTHO05D000183 2.8e-06 55.5 98 33.7
Glyma.10G128866 Glycine max HOM05D000071 ORTHO05D000029 2.8e-06 55.5 79 39.2
Glyma.20G080700 Glycine max HOM05D000071 ORTHO05D000029 2.8e-06 55.5 65 40.0
Gohir.D11G308600 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.8e-06 55.5 84 36.9
Gorai.007G340200 Gossypium raimondii HOM05D000071 ORTHO05D000029 2.8e-06 55.5 84 36.9
Oeu019457.1 Olea europaea HOM05D000311 ORTHO05D000183 2.8e-06 55.5 108 33.3
Potri.003G025100 Populus trichocarpa HOM05D000311 ORTHO05D000183 2.8e-06 55.5 84 36.9
Rhsim01G0054500 Rhododendron simsii HOM05D000311 ORTHO05D000183 2.8e-06 55.5 110 33.6
Rhsim01G0101800 Rhododendron simsii HOM05D000311 ORTHO05D000183 2.8e-06 55.5 88 36.4
Sabra05G0005900 Salix brachista HOM05D000311 ORTHO05D000183 2.8e-06 55.5 92 38.0
vmacro07754 Vaccinium macrocarpon HOM05D000311 ORTHO05D000183 2.8e-06 55.5 88 38.6
COL.COLO4_34812 Corchorus olitorius HOM05D000311 ORTHO05D000183 3.6e-06 55.1 103 34.0
Dinv19270 Davidia involucrata HOM05D000311 ORTHO05D000183 3.6e-06 55.1 98 33.7
Duzib212G0440 Durio zibethinus HOM05D000311 ORTHO05D000183 3.6e-06 55.1 104 37.5
Eucgr.B00535 Eucalyptus grandis HOM05D000311 ORTHO05D000183 3.6e-06 55.1 57 40.4
Eucgr.E04266 Eucalyptus grandis HOM05D000311 ORTHO05D000183 3.6e-06 55.1 82 39.0
Gohir.A06G188432 Gossypium hirsutum HOM05D000311 ORTHO05D000183 3.6e-06 55.1 100 35.0
VMungo0720G1983 Vigna mungo HOM05D000071 ORTHO05D000029 3.6e-06 55.1 56 46.4
Actinidia13955 Actinidia chinensis HOM05D000311 ORTHO05D000183 4.7e-06 54.7 97 37.1
arahy.Tifrunner.gnm1.ann1.RA000W Arachis hypogaea HOM05D000071 ORTHO05D000029 4.7e-06 54.7 95 31.6
CSS0021594 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 4.7e-06 54.7 102 33.3
Carub.0004s0512 Capsella rubella HOM05D000311 ORTHO05D000183 4.7e-06 54.7 112 30.4
Dinv19809 Davidia involucrata HOM05D000311 ORTHO05D000183 4.7e-06 54.7 90 37.8
Dinv25665 Davidia involucrata HOM05D000071 ORTHO05D000029 4.7e-06 54.7 55 47.3
Dinv35864 Davidia involucrata HOM05D000311 ORTHO05D000183 4.7e-06 54.7 90 37.8
Duzib212G0835 Durio zibethinus HOM05D000311 ORTHO05D000183 4.7e-06 54.7 105 35.2
Oeu019455.2 Olea europaea HOM05D000311 ORTHO05D000183 4.7e-06 54.7 105 33.3
Sabra05G0006200 Salix brachista HOM05D000311 ORTHO05D000183 4.7e-06 54.7 89 37.1
Sabra05G0022000 Salix brachista HOM05D000311 ORTHO05D000183 4.7e-06 54.7 90 36.7
COL.COLO4_11065 Corchorus olitorius HOM05D000311 ORTHO05D000183 6.2e-06 54.3 88 38.6
Dinv08555 Davidia involucrata HOM05D000071 ORTHO05D000029 6.2e-06 54.3 65 40.0
Gohir.A10G216900 Gossypium hirsutum HOM05D000311 ORTHO05D000183 6.2e-06 54.3 73 34.2
MBI18_g24131_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 6.2e-06 54.3 63 39.7
MD05G1235900 Malus domestica HOM05D000071 ORTHO05D000029 6.2e-06 54.3 100 32.0
QL04p004370 Quercus lobata HOM05D000311 ORTHO05D000183 6.2e-06 54.3 94 35.1
Sabra05G0021000 Salix brachista HOM05D000311 ORTHO05D000183 6.2e-06 54.3 97 35.1
Sopen04g006540 Solanum pennellii HOM05D000311 ORTHO05D000183 6.2e-06 54.3 88 35.2
CSS0034505 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 8.1e-06 53.9 101 33.7
ClCG01G004900 Citrullus lanatus HOM05D000071 ORTHO05D000029 8.1e-06 53.9 103 32.0
Eucgr.C04405 Eucalyptus grandis HOM05D000311 ORTHO05D000183 8.1e-06 53.9 84 38.1
Gorai.005G031900 Gossypium raimondii HOM05D000311 ORTHO05D000183 8.1e-06 53.9 86 37.2
Medtr7g014960 Medicago truncatula HOM05D000071 ORTHO05D000029 8.1e-06 53.9 55 45.5
Potri.003G041600 Populus trichocarpa HOM05D000311 ORTHO05D000183 8.1e-06 53.9 87 39.1
QL04p003897 Quercus lobata HOM05D000311 ORTHO05D000183 8.1e-06 53.9 63 42.9
QL04p004701 Quercus lobata HOM05D000311 ORTHO05D000183 8.1e-06 53.9 62 43.5


User provided reference genes

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