Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 2.2e-58 228.8 119 100.0
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 1.8e-44 182.6 119 81.5
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 7.6e-43 177.2 119 80.7
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 1.4e-36 156.4 122 69.7
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 3.1e-36 155.2 123 69.1
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 4.0e-36 154.8 119 73.9
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 4.0e-36 154.8 124 68.5
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.2e-35 153.3 122 68.0
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.6e-35 152.1 119 70.6
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 3.4e-35 151.8 117 70.9
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 1.3e-34 149.8 118 65.3
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 4.9e-34 147.9 119 70.6
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 2.1e-32 142.5 118 62.7
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.7e-32 142.1 118 64.4
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 2.7e-32 142.1 112 72.3
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 6.0e-32 141.0 123 61.8
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 2.3e-31 139.0 121 59.5
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.3e-31 139.0 121 59.5
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 2.3e-31 139.0 121 59.5
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 3.0e-31 138.7 118 61.9
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 3.0e-31 138.7 118 61.9
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 3.9e-31 138.3 121 61.2
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 3.9e-31 138.3 119 63.0
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.1e-31 137.9 121 59.5
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 5.1e-31 137.9 122 63.1
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 1.1e-30 136.7 122 62.3
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 2.5e-30 135.6 121 59.5
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.5e-30 135.6 119 62.2
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 4.3e-30 134.8 110 67.3
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 7.4e-30 134.0 120 60.0
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 1.6e-29 132.9 120 59.2
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 1.6e-29 132.9 81 79.0
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 2.1e-29 132.5 112 61.6
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 2.1e-29 132.5 110 58.2
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.8e-29 132.1 119 59.7
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 4.8e-29 131.3 119 59.7
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 6.2e-29 131.0 119 57.1
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 8.2e-29 130.6 119 64.7
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 1.4e-28 129.8 75 85.3
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 1.8e-28 129.4 122 61.5
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.8e-28 129.4 80 78.8
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 1.8e-28 129.4 118 59.3
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 3.1e-28 128.6 121 57.9
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 3.1e-28 128.6 119 58.0
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 3.1e-28 128.6 119 58.0
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.1e-28 128.6 118 58.5
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.3e-28 127.9 121 57.0
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 5.3e-28 127.9 119 63.9
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 5.3e-28 127.9 119 61.3
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 5.3e-28 127.9 119 61.3
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.9e-28 127.5 122 59.0
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 6.9e-28 127.5 93 65.6
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 9.0e-28 127.1 121 56.2
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 9.0e-28 127.1 112 57.1
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 2.0e-27 125.9 124 59.7
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 2.0e-27 125.9 124 58.9
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 2.6e-27 125.6 80 71.2
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 3.4e-27 125.2 89 66.3
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 3.4e-27 125.2 80 73.8
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 4.5e-27 124.8 93 62.4
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 7.6e-27 124.0 89 66.3
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 7.6e-27 124.0 117 57.3
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 7.6e-27 124.0 88 67.0
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 1.0e-26 123.6 111 58.6
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.7e-26 122.9 121 57.9
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.7e-26 122.9 121 57.9
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.7e-26 122.9 121 57.9
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.7e-26 122.9 122 58.2
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 1.7e-26 122.9 111 58.6
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 2.2e-26 122.5 111 58.6
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 2.9e-26 122.1 79 72.2
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 2.9e-26 122.1 80 73.8
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 3.8e-26 121.7 115 54.8
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 3.8e-26 121.7 115 54.8
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 3.8e-26 121.7 115 54.8
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 3.8e-26 121.7 122 61.5
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 5.0e-26 121.3 97 61.9
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 5.0e-26 121.3 119 58.8
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 5.0e-26 121.3 119 58.0
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 6.5e-26 120.9 121 58.7
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 6.5e-26 120.9 113 56.6
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 8.4e-26 120.6 151 49.0
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 1.1e-25 120.2 123 54.5
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.1e-25 120.2 79 70.9
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.1e-25 120.2 79 70.9
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.4e-25 119.8 80 70.0
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.4e-25 119.8 129 49.6
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.9e-25 119.4 116 55.2
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 3.2e-25 118.6 109 58.7
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 4.2e-25 118.2 121 57.9
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 5.5e-25 117.9 121 57.9
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 5.5e-25 117.9 104 60.6
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 5.5e-25 117.9 119 54.6
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 5.5e-25 117.9 115 54.8
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 7.2e-25 117.5 88 65.9
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 9.3e-25 117.1 110 53.6
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 2.7e-24 115.5 110 57.3
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 2.7e-24 115.5 121 57.0
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 4.6e-24 114.8 73 72.6
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.6e-24 114.8 117 59.0
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 6.1e-24 114.4 123 54.5
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 6.1e-24 114.4 119 54.6
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 7.9e-24 114.0 80 68.8
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.3e-23 113.2 80 67.5
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.3e-23 113.2 116 56.9
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 3.0e-23 112.1 88 62.5
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 3.0e-23 112.1 72 72.2
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 8.7e-23 110.5 115 53.0
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 8.7e-23 110.5 115 53.0
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.1e-22 110.2 144 47.2
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.9e-22 109.4 117 50.4
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 3.3e-22 108.6 115 55.7
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 3.3e-22 108.6 115 51.3
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.3e-22 108.6 114 54.4
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 7.4e-22 107.5 110 59.1
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.2e-21 105.9 111 55.0
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 2.8e-21 105.5 66 72.7
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 4.8e-21 104.8 97 57.7
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 9.0e-20 100.5 64 73.4
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.2e-19 100.1 89 57.3
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 1.5e-19 99.8 99 56.6
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 2.9e-18 95.5 73 65.8
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 5.0e-18 94.7 59 71.2
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 5.0e-18 94.7 119 47.1
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 6.5e-18 94.4 75 61.3
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.1e-17 93.6 92 56.5
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 2.1e-16 89.4 89 58.4
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 4.6e-16 88.2 64 62.5
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.0e-15 87.0 83 51.8
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.8e-15 86.3 49 77.6
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 2.3e-15 85.9 44 90.9
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 1.1e-14 83.6 85 50.6
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 2.5e-14 82.4 97 53.6
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.3e-13 80.1 96 45.8
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.7e-13 79.7 97 49.5
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.2e-10 69.3 130 36.2
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 4.7e-08 61.6 112 38.4
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 3.3e-06 55.5 76 39.5


User provided reference genes

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