Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 2.2e-293 1011.5 508 100.0
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 1.6e-246 855.9 509 84.5
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 6.6e-245 850.5 509 83.9
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 3.3e-236 821.6 511 79.8
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 2.4e-234 815.5 509 83.9
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 8.9e-234 813.5 510 79.2
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 3.5e-230 801.6 510 77.8
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 1.9e-228 795.8 510 77.8
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 2.8e-227 792.0 510 77.3
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 1.9e-207 726.1 511 71.4
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 1.9e-196 689.5 511 67.3
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 5.9e-193 677.9 451 76.3
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 1.0e-192 677.2 525 65.3
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 4.6e-190 668.3 510 65.7
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 5.7e-188 661.4 514 65.2
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.4e-186 656.8 512 64.8
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 4.1e-186 655.2 511 64.2
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 1.5e-185 653.3 511 64.4
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 2.9e-184 649.0 510 65.1
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 3.8e-184 648.7 511 64.0
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 1.9e-183 646.4 510 62.5
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 1.2e-182 643.7 511 64.0
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 2.1e-182 642.9 552 59.8
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 2.7e-182 642.5 511 63.8
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 3.6e-182 642.1 511 63.8
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 1.8e-181 639.8 530 61.9
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 3.0e-181 639.0 511 63.8
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 6.7e-181 637.9 513 63.7
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 8.8e-181 637.5 509 61.7
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 8.8e-181 637.5 510 62.5
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 1.1e-180 637.1 510 64.1
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.5e-180 636.7 510 62.7
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 4.4e-180 635.2 514 61.9
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 1.3e-179 633.6 510 64.7
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 3.7e-179 632.1 522 61.9
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 5.3e-178 628.2 512 61.1
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 7.0e-178 627.9 510 62.0
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 1.7e-176 623.2 511 60.5
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 3.8e-176 622.1 512 61.1
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 5.0e-176 621.7 551 59.3
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 6.5e-176 621.3 510 60.4
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 8.5e-176 620.9 514 59.9
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 1.6e-174 616.7 512 60.2
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 1.6e-174 616.7 511 60.1
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 1.4e-173 613.6 513 61.6
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 3.0e-173 612.5 512 60.9
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 6.7e-173 611.3 512 61.1
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 2.8e-171 605.9 511 58.1
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 1.1e-170 604.0 514 60.1
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 7.0e-170 601.3 510 60.2
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 2.6e-169 599.4 516 58.3
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 2.6e-169 599.4 513 60.2
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 4.5e-169 598.6 514 58.4
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 7.7e-169 597.8 510 59.8
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.3e-168 597.0 541 57.7
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 8.5e-168 594.3 513 58.5
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 7.2e-167 591.3 513 57.7
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 7.2e-167 591.3 552 56.2
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 1.6e-166 590.1 517 57.6
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 2.1e-166 589.7 514 58.0
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 2.1e-166 589.7 521 57.8
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 2.1e-166 589.7 510 58.4
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 2.7e-166 589.3 513 58.7
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 3.6e-166 589.0 515 58.4
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 6.1e-166 588.2 516 58.5
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 1.0e-165 587.4 513 56.9
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 1.4e-165 587.0 511 57.5
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 3.0e-165 585.9 514 57.0
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 1.2e-164 583.9 513 57.5
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 9.7e-164 580.9 520 57.9
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 2.8e-163 579.3 510 57.5
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 2.8e-163 579.3 510 57.5
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 4.8e-163 578.6 513 58.5
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 8.3e-163 577.8 513 56.9
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 7.0e-162 574.7 514 57.0
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 9.1e-162 574.3 505 55.8
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 1.2e-161 573.9 483 59.8
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 1.6e-161 573.5 510 56.9
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 2.9e-160 569.3 513 56.1
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 6.5e-160 568.2 491 58.2
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 5.5e-159 565.1 496 57.3
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 1.4e-157 560.5 583 51.8
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 1.2e-156 557.4 510 56.5
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 2.2e-155 553.1 467 61.9
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 1.4e-154 550.4 510 55.3
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 2.7e-153 546.2 460 61.1
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 2.9e-152 542.7 433 64.2
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 1.9e-151 540.0 482 57.1
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.9e-151 540.0 600 51.2
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 2.5e-151 539.7 387 70.8
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 2.8e-150 536.2 426 63.8
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 2.3e-149 533.1 515 54.2
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 4.1e-146 522.3 534 52.1
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 6.8e-141 505.0 531 53.1
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 3.0e-136 489.6 509 51.7
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 1.7e-131 473.8 461 53.8
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 4.7e-126 455.7 519 45.5
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 9.9e-124 448.0 468 50.0
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 1.2e-118 431.0 375 59.5
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 1.5e-111 407.5 524 42.9
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 2.0e-108 397.1 340 61.2
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 1.1e-98 364.8 527 40.6
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 2.8e-94 350.1 379 48.0
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.8e-93 347.4 385 52.2
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 4.0e-93 346.3 325 58.5
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 1.1e-90 338.2 428 47.9
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 3.0e-88 330.1 455 43.5
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 4.6e-81 306.2 340 46.8
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 7.7e-76 288.9 263 60.1
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 1.2e-73 281.6 317 48.3
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 8.8e-72 275.4 196 67.9
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 8.2e-70 268.9 454 39.2
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 1.0e-64 251.9 426 38.7
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 3.7e-62 243.4 374 41.4
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 1.6e-57 228.0 215 61.4
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 8.0e-57 225.7 177 62.1
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 1.1e-55 221.9 135 80.7
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 7.0e-53 212.6 540 30.7
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 1.6e-49 201.4 355 36.6
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.1e-42 178.7 120 73.3
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.1e-42 178.7 120 73.3
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 5.7e-39 166.4 137 57.7
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 9.8e-31 139.0 502 28.7
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 4.1e-29 133.7 192 42.2
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 1.3e-22 112.1 114 50.9
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 1.9e-21 108.2 60 78.3
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 6.6e-19 99.8 84 57.1
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.1e-17 94.7 64 65.6
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 8.1e-17 92.8 61 70.5
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 8.1e-17 92.8 61 70.5
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 8.1e-17 92.8 53 73.6
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 4.0e-16 90.5 63 58.7
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 4.4e-15 87.0 65 58.5
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 1.1e-10 72.4 146 32.2


User provided reference genes

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