Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 1.5e-153 546.2 290 100.0
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 1.5e-116 423.3 267 86.9
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 5.2e-85 318.5 282 66.3
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 9.7e-84 314.3 272 66.5
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 1.1e-82 310.8 268 65.3
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 5.5e-79 298.5 268 63.4
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 4.5e-73 278.9 269 61.0
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 1.6e-70 270.4 266 58.6
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 2.0e-65 253.4 274 58.8
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 9.5e-63 244.6 278 54.3
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.7e-56 223.8 281 49.8
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 5.6e-55 218.8 272 50.7
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.6e-54 217.2 273 47.3
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 2.8e-54 216.5 274 46.4
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 7.5e-52 208.4 278 46.4
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 6.4e-51 205.3 274 45.6
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 1.1e-50 204.5 276 47.8
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 9.2e-50 201.4 271 45.8
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 3.5e-49 199.5 277 46.2
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.6e-49 199.1 261 46.0
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.6e-49 199.1 262 45.8
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 4.6e-49 199.1 263 47.1
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 5.9e-49 198.7 268 45.5
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 7.8e-49 198.4 285 46.0
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 5.6e-47 192.2 266 45.9
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 1.2e-46 191.0 269 48.0
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.2e-46 191.0 259 47.1
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 2.8e-46 189.9 259 47.9
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 6.2e-46 188.7 269 43.9
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 6.2e-46 188.7 259 47.5
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 1.0e-45 188.0 269 44.2
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.0e-45 188.0 277 43.3
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 3.1e-45 186.4 278 44.2
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 3.4e-44 183.0 269 45.0
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 2.9e-43 179.9 271 43.9
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.7e-43 179.5 267 43.1
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 1.4e-42 177.6 267 44.6
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 4.1e-42 176.0 277 44.0
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 5.4e-42 175.6 270 43.0
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 8.6e-40 168.3 242 45.5
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 1.9e-39 167.2 273 41.4
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 3.3e-39 166.4 276 40.9
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 7.3e-39 165.2 275 41.1
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 7.3e-39 165.2 308 39.9
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 9.5e-39 164.9 272 41.9
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 9.5e-39 164.9 277 40.8
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 1.6e-38 164.1 261 39.8
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 2.1e-38 163.7 271 42.8
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 3.6e-38 162.9 261 40.2
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 6.2e-38 162.2 279 41.2
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 2.3e-37 160.2 267 41.6
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 5.2e-37 159.1 271 39.5
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 6.8e-37 158.7 270 41.9
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 8.9e-37 158.3 271 40.6
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 1.2e-36 157.9 275 39.6
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 3.4e-36 156.4 276 37.7
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 3.4e-36 156.4 276 37.3
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 5.8e-36 155.6 241 40.7
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 4.9e-35 152.5 272 36.4
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 6.4e-35 152.1 272 37.9
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 1.4e-34 151.0 268 40.7
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 1.4e-34 151.0 282 38.7
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 3.2e-34 149.8 246 39.0
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 4.1e-34 149.4 274 39.1
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 2.1e-33 147.1 288 36.5
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 3.5e-33 146.4 260 39.6
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 3.5e-33 146.4 190 44.2
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 7.8e-33 145.2 260 40.8
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 7.8e-33 145.2 278 37.8
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.0e-32 144.8 268 41.4
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.0e-32 144.8 260 40.0
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 3.0e-32 143.3 265 40.4
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 5.1e-32 142.5 263 36.5
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 6.6e-32 142.1 287 36.6
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 8.6e-32 141.7 270 39.6
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 8.6e-32 141.7 235 40.4
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.5e-31 141.0 228 39.5
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 1.9e-31 140.6 268 39.2
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 1.9e-31 140.6 259 40.2
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 3.3e-31 139.8 208 42.3
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 5.6e-31 139.0 208 43.8
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 7.3e-31 138.7 259 39.4
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 9.5e-31 138.3 275 40.0
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.2e-30 137.9 250 40.8
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 2.1e-30 137.1 250 40.0
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 2.8e-30 136.7 259 38.2
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 4.7e-30 136.0 228 41.2
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 6.2e-30 135.6 220 40.0
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.8e-29 134.0 241 37.8
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 3.1e-29 133.3 266 35.3
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 5.2e-29 132.5 246 38.6
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 5.2e-29 132.5 234 40.2
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 1.5e-28 131.0 254 38.6
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 2.0e-28 130.6 250 38.4
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 4.4e-28 129.4 199 40.7
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 5.8e-28 129.0 224 38.4
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 1.9e-26 124.0 264 31.1
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 5.4e-26 122.5 222 36.0
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 1.6e-25 120.9 300 36.3
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 4.6e-25 119.4 249 36.1
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 5.1e-24 115.9 172 42.4
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 8.6e-24 115.2 253 37.5
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 4.3e-23 112.8 177 38.4
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 4.3e-23 112.8 215 39.5
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 5.6e-23 112.5 213 35.2
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 9.6e-23 111.7 234 35.0
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 2.8e-22 110.2 177 40.7
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 6.2e-22 109.0 234 37.2
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 1.1e-21 108.2 196 36.7
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.4e-21 107.1 124 49.2
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 4.0e-21 106.3 203 35.0
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 4.4e-20 102.8 280 29.6
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 6.4e-19 99.0 183 37.2
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 5.4e-18 95.9 227 29.5
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 5.6e-15 85.9 170 35.9
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 4.8e-14 82.8 184 35.9
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 6.2e-14 82.4 143 38.5
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 5.3e-13 79.3 187 34.8
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 6.9e-13 79.0 194 34.0
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 6.9e-13 79.0 194 34.0
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 6.9e-13 79.0 194 34.0
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 6.9e-13 79.0 194 34.0
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 9.9e-12 75.1 126 39.7
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 2.2e-11 73.9 209 29.2
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 3.8e-11 73.2 188 28.7
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 3.8e-11 73.2 100 41.0
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 1.4e-10 71.2 232 27.6
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.9e-10 70.9 98 46.9
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 5.4e-10 69.3 123 37.4
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 4.6e-09 66.2 232 24.6
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 4.6e-09 66.2 240 26.2


User provided reference genes

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