Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 1.7e-180 636.0 341 100.0
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 1.4e-137 493.4 333 77.2
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 5.2e-137 491.5 351 80.1
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 1.5e-136 490.0 334 80.8
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 8.6e-132 474.2 335 78.8
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 4.3e-131 471.9 289 88.2
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 8.9e-121 437.6 336 74.4
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 1.7e-119 433.3 240 85.4
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 1.1e-118 430.6 330 74.5
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 2.7e-109 399.4 297 65.3
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 2.7e-109 399.4 295 68.5
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.0e-108 397.5 322 63.4
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 2.3e-108 396.4 337 61.1
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 2.3e-108 396.4 296 64.5
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 2.3e-108 396.4 237 79.7
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 1.1e-107 394.0 240 78.8
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 8.1e-106 387.9 322 62.7
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 1.4e-105 387.1 320 63.4
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 4.0e-105 385.6 240 77.1
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 3.4e-104 382.5 236 75.8
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 2.9e-103 379.4 206 89.3
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 3.8e-103 379.0 327 62.4
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 3.2e-102 375.9 324 62.3
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 2.7e-101 372.9 327 59.9
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 7.9e-101 371.3 327 55.7
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 1.0e-100 370.9 237 72.6
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 1.3e-100 370.5 276 66.3
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 5.1e-100 368.6 240 73.8
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 1.5e-99 367.1 240 72.1
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 2.5e-99 366.3 298 59.7
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.5e-99 366.3 298 59.7
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 5.6e-99 365.2 240 70.8
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 5.6e-99 365.2 240 71.7
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 7.4e-99 364.8 296 62.2
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 9.6e-99 364.4 240 71.7
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.8e-97 360.1 298 61.4
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 1.8e-97 360.1 240 71.7
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 6.9e-97 358.2 302 59.6
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.8e-95 352.4 239 69.0
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 6.5e-95 351.7 323 59.8
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 1.9e-94 350.1 240 70.8
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 3.2e-94 349.4 238 67.2
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 1.2e-93 347.4 240 69.6
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 1.2e-93 347.4 240 69.6
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 4.6e-93 345.5 330 54.5
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 1.3e-92 344.0 240 69.2
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 1.3e-92 344.0 237 68.4
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 1.5e-91 340.5 234 67.5
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 1.3e-90 337.4 313 59.4
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 1.6e-90 337.0 306 57.5
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 6.3e-90 335.1 240 66.7
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 2.4e-89 333.2 295 57.6
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 5.3e-89 332.0 239 65.7
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 1.2e-88 330.9 293 57.7
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 1.5e-88 330.5 239 65.7
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 2.5e-86 323.2 200 77.5
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 3.6e-85 319.3 211 73.0
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 6.1e-85 318.5 200 74.5
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 6.7e-84 315.1 205 72.7
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 8.7e-84 314.7 240 64.6
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 1.9e-83 313.5 291 63.6
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 1.9e-83 313.5 233 62.7
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 2.2e-82 310.1 237 62.9
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 2.8e-82 309.7 229 75.1
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 1.8e-81 307.0 239 62.3
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 5.9e-80 302.0 240 64.6
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 1.7e-79 300.4 240 64.2
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.7e-79 300.4 296 56.4
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 6.5e-79 298.5 212 69.8
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 6.5e-79 298.5 236 63.1
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 8.5e-79 298.1 236 64.0
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 8.5e-79 298.1 236 63.1
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 1.4e-78 297.4 317 52.1
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.4e-78 297.4 193 72.0
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 3.2e-78 296.2 236 63.6
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 4.2e-78 295.8 236 63.1
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 7.2e-78 295.0 236 62.7
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 1.4e-76 290.8 206 69.9
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 2.0e-75 287.0 377 52.3
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 3.3e-75 286.2 235 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 1.3e-71 274.2 265 53.6
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 4.2e-70 269.2 290 54.5
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 6.1e-69 265.4 237 58.2
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 1.4e-68 264.2 194 80.4
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 1.8e-65 253.8 175 67.4
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 1.2e-64 251.1 171 69.6
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 7.7e-64 248.4 240 53.8
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.2e-61 241.1 174 64.9
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 4.4e-59 232.6 270 48.9
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 1.4e-57 227.6 240 50.8
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 1.7e-55 220.7 190 56.3
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 2.2e-55 220.3 240 50.8
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 3.8e-55 219.5 172 64.0
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 1.1e-54 218.0 297 41.8
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 4.2e-54 216.1 137 72.3
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 3.6e-53 213.0 233 49.4
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 5.2e-52 209.1 233 46.4
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 7.5e-51 205.3 239 46.9
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 2.2e-50 203.8 157 64.3
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 2.7e-48 196.8 289 42.9
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 4.5e-48 196.1 289 41.9
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 8.0e-45 185.3 130 70.0
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 2.3e-44 183.7 238 45.4
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.5e-43 181.0 108 79.6
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 5.7e-43 179.1 107 75.7
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 7.5e-43 178.7 246 44.3
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 2.2e-42 177.2 228 45.2
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 1.9e-38 164.1 332 35.5
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 6.1e-37 159.1 234 40.6
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 1.2e-35 154.8 91 82.4
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 2.0e-35 154.1 147 53.1
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 3.4e-35 153.3 105 71.4
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 4.9e-34 149.4 91 80.2
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 8.3e-34 148.7 91 79.1
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 1.4e-33 147.9 91 79.1
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 7.3e-30 135.6 153 49.7
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 7.3e-30 135.6 237 38.0
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 5.2e-28 129.4 261 34.9
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 1.4e-25 121.3 118 55.9
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 6.0e-24 115.9 123 47.2
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 2.5e-22 110.5 237 34.2
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 7.3e-22 109.0 71 70.4
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 7.3e-22 109.0 97 56.7
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 4.7e-21 106.3 136 47.1
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 3.1e-20 103.6 71 70.4
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 3.7e-18 96.7 230 32.6
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 4.1e-17 93.2 68 67.6
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 5.4e-17 92.8 65 66.2
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 2.1e-16 90.9 50 88.0
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 1.2e-13 81.6 63 63.5
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 5.8e-11 72.8 51 66.7
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 2.4e-09 67.4 111 36.9
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 2.1e-08 64.3 56 51.8
BraA01t00799Z Brassica rapa HOM05D006034 ORTHO05D007535 6.6e-07 59.3 102 38.2


User provided reference genes

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