Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G118066 Glycine max HOM05D000061 ORTHO05D014228 7.4e-18 92.8 47 100.0
Glyma.07G118200 Glycine max HOM05D000061 ORTHO05D000915 2.0e-15 84.7 47 91.5
Ca_07504_v3 Cicer arietinum L. HOM05D000061 ORTHO05D000915 7.2e-13 76.3 47 83.0
TPR.G29165 Trifolium pratense HOM05D000061 ORTHO05D000915 9.4e-13 75.9 47 85.1
Phvul.010G043900 Phaseolus vulgaris HOM05D000061 ORTHO05D000915 1.6e-12 75.1 46 80.4
arahy.Tifrunner.gnm1.ann1.G5620Q Arachis hypogaea HOM05D000061 ORTHO05D000915 6.1e-12 73.2 47 76.6
Medtr8g008530 Medicago truncatula HOM05D000061 ORTHO05D000915 6.1e-12 73.2 47 74.5
Lj3g0001005 Lotus japonicus HOM05D000061 ORTHO05D000915 8.0e-12 72.8 47 78.7
Medtr0147s0030 Medicago truncatula HOM05D000061 ORTHO05D000915 8.0e-12 72.8 47 76.6
Medtr7g055793 Medicago truncatula HOM05D000061 ORTHO05D000915 1.0e-11 72.4 47 78.7
Psat3g150200 Pisum sativum HOM05D000061 ORTHO05D000915 1.0e-11 72.4 47 78.7
VMungo0331G0145 Vigna mungo HOM05D000061 ORTHO05D000915 1.4e-11 72.0 48 79.2
Medtr8g469360 Medicago truncatula HOM05D000061 ORTHO05D000915 4.0e-11 70.5 47 74.5
arahy.Tifrunner.gnm1.ann1.MS4PPI Arachis hypogaea HOM05D000061 ORTHO05D000915 5.2e-11 70.1 47 74.5
TPR.G32139 Trifolium pratense HOM05D000061 ORTHO05D014228 5.2e-11 70.1 47 72.3
Lalb_Chr07g0195231 Lupinus albus HOM05D000061 ORTHO05D000050 1.5e-10 68.6 47 72.3
Psat4g222800 Pisum sativum HOM05D000061 ORTHO05D000915 2.0e-10 68.2 47 74.5
Eucgr.D01198 Eucalyptus grandis HOM05D000061 ORTHO05D000915 4.4e-10 67.0 47 72.3
TPR.G24636 Trifolium pratense HOM05D000061 ORTHO05D000915 1.3e-09 65.5 47 74.5
TPR.G6496 Trifolium pratense HOM05D000061 ORTHO05D000915 1.3e-09 65.5 47 74.5
Thecc.01G400900 Theobroma cacao HOM05D000061 ORTHO05D000915 3.7e-09 63.9 47 63.8
Cc02_g25420 Coffea canephora HOM05D000061 ORTHO05D000915 8.3e-09 62.8 47 66.0
Lju124A10T16 Lonicera japonica HOM05D000061 ORTHO05D000915 8.3e-09 62.8 47 68.1
Lalb_Chr07g0195261 Lupinus albus HOM05D000061 ORTHO05D000915 8.3e-09 62.8 47 63.8
MBI03_g05199_MAGBIO Magnolia biondii HOM05D000061 ORTHO05D000915 1.8e-08 61.6 47 61.7
Atru.chr5.88 Acer truncatum HOM05D000061 ORTHO05D000915 2.4e-08 61.2 47 66.0
Eucgr.D01197 Eucalyptus grandis HOM05D000061 ORTHO05D000915 2.4e-08 61.2 47 66.0
ATR0804G030 Amborella trichopoda HOM05D000061 ORTHO05D000915 4.1e-08 60.5 47 57.4
Dinv21871 Davidia involucrata HOM05D000061 ORTHO05D000915 4.1e-08 60.5 39 66.7
Lj7A549G59 Lonicera japonica HOM05D000061 ORTHO05D000915 5.4e-08 60.1 47 68.1
MD07G1095100 Malus domestica HOM05D000061 ORTHO05D000915 5.4e-08 60.1 47 68.1
Lj1A970G58 Lonicera japonica HOM05D000061 ORTHO05D000915 9.1e-08 59.3 39 69.2
COL.COLO4_12367 Corchorus olitorius HOM05D000061 ORTHO05D000915 1.2e-07 58.9 47 63.8
Gohir.D05G065900 Gossypium hirsutum HOM05D000061 ORTHO05D000915 1.2e-07 58.9 47 61.7
Gorai.009G066700 Gossypium raimondii HOM05D000061 ORTHO05D000915 1.2e-07 58.9 47 61.7
Gohir.A12G098300 Gossypium hirsutum HOM05D000061 ORTHO05D000915 1.6e-07 58.5 47 66.0
Gohir.D12G101500 Gossypium hirsutum HOM05D000061 ORTHO05D000915 1.6e-07 58.5 47 66.0
Gorai.008G110600 Gossypium raimondii HOM05D000061 ORTHO05D000915 1.6e-07 58.5 47 66.0
Duzib138G1593 Durio zibethinus HOM05D000061 ORTHO05D000915 2.0e-07 58.2 47 61.7
Duzib187G0594 Durio zibethinus HOM05D000061 ORTHO05D000915 2.0e-07 58.2 47 61.7
Gohir.A05G063300 Gossypium hirsutum HOM05D000061 ORTHO05D000915 2.0e-07 58.2 47 61.7
Nitab4.5_0000105g0360 Nicotiana tabacum HOM05D000061 ORTHO05D000915 2.0e-07 58.2 47 59.6
SGA_v2.0_scaffold340G49338 Striga asiatica HOM05D000061 ORTHO05D000915 2.0e-07 58.2 47 66.0
arahy.Tifrunner.gnm1.ann1.66AX9V Arachis hypogaea HOM05D000061 ORTHO05D000915 2.7e-07 57.8 39 64.1
EL10Ac1g00733 Beta vulgaris HOM05D000061 ORTHO05D000915 2.7e-07 57.8 47 68.1
AUR62023384 Chenopodium quinoa HOM05D000061 ORTHO05D000915 2.7e-07 57.8 45 64.4
Haze_17385 Corylus avellana HOM05D000061 ORTHO05D000915 2.7e-07 57.8 47 57.4
MBI03_g05198_MAGBIO Magnolia biondii HOM05D000061 ORTHO05D000915 2.7e-07 57.8 47 61.7
arahy.Tifrunner.gnm1.ann1.08738Y Arachis hypogaea HOM05D000061 ORTHO05D000915 3.5e-07 57.4 47 57.4
CAN.G874.61 Capsicum annuum HOM05D000061 ORTHO05D000915 3.5e-07 57.4 47 55.3
Cpa.g.sc23.35 Carica papaya HOM05D000061 ORTHO05D000915 3.5e-07 57.4 47 57.4
QL04p026632 Quercus lobata HOM05D000061 ORTHO05D000915 3.5e-07 57.4 43 69.8
Atru.chr12.226 Acer truncatum HOM05D000061 ORTHO05D000915 4.5e-07 57.0 47 53.2
Glyma.04G224800 Glycine max HOM05D000061 ORTHO05D000915 4.5e-07 57.0 39 64.1
Glyma.06G140000 Glycine max HOM05D000061 ORTHO05D000915 4.5e-07 57.0 39 64.1
Sabra14G0036800 Salix brachista HOM05D000061 ORTHO05D000915 4.5e-07 57.0 46 63.0
Sabra14G0039000 Salix brachista HOM05D000061 ORTHO05D000915 4.5e-07 57.0 46 63.0
Sed0000520 Sechium edule HOM05D000061 ORTHO05D000915 4.5e-07 57.0 47 59.6
Sc26g0001680 Simmondsia chinensis HOM05D000061 ORTHO05D000915 4.5e-07 57.0 47 59.6
Thecc.09G008900 Theobroma cacao HOM05D000061 ORTHO05D000915 4.5e-07 57.0 47 59.6
Nn5g26766 Nelumbo nucifera HOM05D000061 ORTHO05D000915 5.9e-07 56.6 46 60.9
QL04p093695 Quercus lobata HOM05D000061 ORTHO05D000915 5.9e-07 56.6 43 67.4
RcHm_v2.0_Chr1g0344981 Rosa chinensis HOM05D000061 ORTHO05D000915 5.9e-07 56.6 47 66.0
Hund13425 Selenicereus undatus HOM05D000061 ORTHO05D000915 5.9e-07 56.6 47 57.4
TAR628G1691 Trochodendron aralioides HOM05D000061 ORTHO05D000915 5.9e-07 56.6 47 61.7
Haze_02887 Corylus avellana HOM05D000061 ORTHO05D000915 7.7e-07 56.2 47 61.7
Lj1g0014891 Lotus japonicus HOM05D000061 ORTHO05D000915 7.7e-07 56.2 47 55.3
Nitab4.5_0000563g0110 Nicotiana tabacum HOM05D000061 ORTHO05D000915 7.7e-07 56.2 47 66.0
Prupe.2G119500 Prunus persica HOM05D000061 ORTHO05D000915 7.7e-07 56.2 47 63.8
TAR633G1820 Trochodendron aralioides HOM05D000061 ORTHO05D000915 7.7e-07 56.2 47 61.7
Ca_16846_v3 Cicer arietinum L. HOM05D000061 ORTHO05D000915 1.0e-06 55.8 39 64.1
Lsat_1_v5_gn_8_11060 Lactuca sativa HOM05D000061 ORTHO05D000915 1.0e-06 55.8 39 64.1
Medtr3g093530 Medicago truncatula HOM05D000061 ORTHO05D000915 1.0e-06 55.8 39 64.1
PSO339G6457 Papaver somniferum HOM05D000061 ORTHO05D000915 1.0e-06 55.8 39 66.7
Psat5g070280 Pisum sativum HOM05D000061 ORTHO05D000915 1.0e-06 55.8 39 64.1
QL04p027032 Quercus lobata HOM05D000061 ORTHO05D000915 1.0e-06 55.8 39 76.9
Sabra19G0079500 Salix brachista HOM05D000061 ORTHO05D000915 1.0e-06 55.8 47 57.4
PGSC0003DMG400001692 Solanum tuberosum HOM05D000061 ORTHO05D000915 1.0e-06 55.8 47 61.7
TPR.G13974 Trifolium pratense HOM05D000061 ORTHO05D000915 1.0e-06 55.8 39 64.1
CSS0001793 Camellia sinensis var. sinensis HOM05D000061 ORTHO05D000915 1.3e-06 55.5 39 64.1
Duzib128G0512 Durio zibethinus HOM05D000061 ORTHO05D000915 1.3e-06 55.5 39 71.8
Duzib168G0766 Durio zibethinus HOM05D000061 ORTHO05D000915 1.3e-06 55.5 47 55.3
Migut.B01503 Erythranthe guttata HOM05D000061 ORTHO05D000915 1.3e-06 55.5 47 59.6
FvH4_7g09120 Fragaria vesca HOM05D000061 ORTHO05D000915 1.3e-06 55.5 45 57.8
HanXRQChr08g0223031 Helianthus annuus HOM05D000061 ORTHO05D000915 1.3e-06 55.5 39 64.1
Oeu028913.1 Olea europaea HOM05D000061 ORTHO05D000915 1.3e-06 55.5 39 74.4
Potri.019G064200 Populus trichocarpa HOM05D000061 ORTHO05D000915 1.3e-06 55.5 47 57.4
QL04p026622 Quercus lobata HOM05D000061 ORTHO05D000915 1.3e-06 55.5 43 67.4
QL04p027023 Quercus lobata HOM05D000061 ORTHO05D000915 1.3e-06 55.5 43 67.4
Hund17115 Selenicereus undatus HOM05D000061 ORTHO05D000915 1.3e-06 55.5 45 64.4
Thecc.01G400800 Theobroma cacao HOM05D000061 ORTHO05D000915 1.3e-06 55.5 47 59.6
TAR636G1459 Trochodendron aralioides HOM05D000061 ORTHO05D000915 1.3e-06 55.5 39 69.2
GSVIVG01018323001 Vitis vinifera HOM05D000061 ORTHO05D000915 1.3e-06 55.5 47 63.8
Aqoxy2G01481 Aquilegia oxysepala HOM05D000061 ORTHO05D000915 1.7e-06 55.1 47 59.6
Dinv12300 Davidia involucrata HOM05D000061 ORTHO05D000915 1.7e-06 55.1 39 66.7
Dinv28761 Davidia involucrata HOM05D000061 ORTHO05D000915 1.7e-06 55.1 39 66.7
FAN01G1678 Fragaria x ananassa HOM05D000061 ORTHO05D000915 1.7e-06 55.1 47 59.6
Nitab4.5_0001493g0040 Nicotiana tabacum HOM05D000061 ORTHO05D000915 1.7e-06 55.1 46 52.2
THA.LOC104814975 Tarenaya hassleriana HOM05D000061 ORTHO05D000915 1.7e-06 55.1 45 53.3
GSVIVG01018325001 Vitis vinifera HOM05D000061 ORTHO05D000915 1.7e-06 55.1 39 71.8
CSS0004602 Camellia sinensis var. sinensis HOM05D000061 ORTHO05D000915 2.2e-06 54.7 39 59.0
CAN.G297.7 Capsicum annuum HOM05D000061 ORTHO05D000915 2.2e-06 54.7 46 52.2
ClCG06G008080 Citrullus lanatus HOM05D000061 ORTHO05D000915 2.2e-06 54.7 47 55.3
MD02G1221300 Malus domestica HOM05D000061 ORTHO05D000915 2.2e-06 54.7 48 66.7
Nitab4.5_0002902g0040 Nicotiana tabacum HOM05D000061 ORTHO05D000915 2.2e-06 54.7 47 55.3
QL04p027128 Quercus lobata HOM05D000061 ORTHO05D000915 2.2e-06 54.7 43 67.4
QL04p027482 Quercus lobata HOM05D000061 ORTHO05D000915 2.2e-06 54.7 43 67.4
AT5G24910 Arabidopsis thaliana HOM05D000061 ORTHO05D000915 2.9e-06 54.3 45 55.6
CANSAT56G0608 Cannabis sativa HOM05D000061 ORTHO05D000915 2.9e-06 54.3 39 64.1
Carub.0006s2277 Capsella rubella HOM05D000061 ORTHO05D000915 2.9e-06 54.3 45 55.6
ClCG06G007910 Citrullus lanatus HOM05D000061 ORTHO05D000915 2.9e-06 54.3 46 58.7
COL.COLO4_12368 Corchorus olitorius HOM05D000061 ORTHO05D000050 2.9e-06 54.3 45 62.2
MELO3C020435.2 Cucumis melo HOM05D000061 ORTHO05D000915 2.9e-06 54.3 47 57.4
CsaV3_2G011650 Cucumis sativus L. HOM05D000061 ORTHO05D000915 2.9e-06 54.3 47 57.4
ECA233G0544 Erigeron canadensis HOM05D000061 ORTHO05D000915 2.9e-06 54.3 39 64.1
Thhalv10005302m.g Eutrema salsugineum HOM05D000061 ORTHO05D000915 2.9e-06 54.3 47 55.3
Nn8g39081 Nelumbo nucifera HOM05D000061 ORTHO05D000915 2.9e-06 54.3 45 57.8
Potri.014G052000 Populus trichocarpa HOM05D000061 ORTHO05D000915 2.9e-06 54.3 46 60.9
PGR004G0242 Punica granatum HOM05D000061 ORTHO05D000915 2.9e-06 54.3 39 71.8
SalBow5G5323 Salvia bowleyana HOM05D000061 ORTHO05D000915 2.9e-06 54.3 47 59.6
Sc14g0005710 Simmondsia chinensis HOM05D000061 ORTHO05D000915 2.9e-06 54.3 47 53.2
Solyc03g095310.3 Solanum lycopersicum HOM05D000061 ORTHO05D000915 2.9e-06 54.3 46 52.2
Sopen03g025330 Solanum pennellii HOM05D000061 ORTHO05D000915 2.9e-06 54.3 46 52.2
PGSC0003DMG400005261 Solanum tuberosum HOM05D000061 ORTHO05D000915 2.9e-06 54.3 46 52.2
Thecc.10G100200 Theobroma cacao HOM05D000061 ORTHO05D000915 2.9e-06 54.3 47 57.4
TAR633G1971 Trochodendron aralioides HOM05D000061 ORTHO05D000915 2.9e-06 54.3 47 53.2
CANSAT25G1916 Cannabis sativa HOM05D000061 ORTHO05D000915 3.8e-06 53.9 47 63.8
CsaV3_2G011110 Cucumis sativus L. HOM05D000061 ORTHO05D000915 3.8e-06 53.9 46 54.3
Lalb_Chr10g0102921 Lupinus albus HOM05D000061 ORTHO05D000915 3.8e-06 53.9 47 53.2
MD07G1095000 Malus domestica HOM05D000061 ORTHO05D000915 3.8e-06 53.9 47 59.6
Manes.16G134300 Manihot esculenta HOM05D000061 ORTHO05D000915 3.8e-06 53.9 39 64.1
Nitab4.5_0000103g0030 Nicotiana tabacum HOM05D000061 ORTHO05D000915 3.8e-06 53.9 46 50.0
Oeu058219.1 Olea europaea HOM05D000061 ORTHO05D000915 3.8e-06 53.9 39 64.1
Oeu064695.1 Olea europaea HOM05D000061 ORTHO05D000915 3.8e-06 53.9 39 64.1
Zm00001eb111610 Zea mays HOM05D000061 ORTHO05D000915 3.8e-06 53.9 46 52.2
Dinv34515 Davidia involucrata HOM05D000061 ORTHO05D000915 5.0e-06 53.5 39 59.0
Lalb_Chr08g0239331 Lupinus albus HOM05D000061 ORTHO05D000915 5.0e-06 53.5 47 53.2
Lalb_Chr11g0067601 Lupinus albus HOM05D000061 ORTHO05D000915 5.0e-06 53.5 47 48.9
Os12g0119000 Oryza sativa ssp. japonica HOM05D000061 ORTHO05D000915 5.0e-06 53.5 39 66.7
Prupe.2G120000 Prunus persica HOM05D000061 ORTHO05D000915 5.0e-06 53.5 47 55.3
RcHm_v2.0_Chr1g0344991 Rosa chinensis HOM05D000061 ORTHO05D000915 5.0e-06 53.5 45 53.3
RcHm_v2.0_Chr1g0345031 Rosa chinensis HOM05D000061 ORTHO05D000915 5.0e-06 53.5 45 53.3
RcHm_v2.0_Chr1g0372801 Rosa chinensis HOM05D000061 ORTHO05D000915 5.0e-06 53.5 39 61.5
Solyc06g082730.2 Solanum lycopersicum HOM05D000061 ORTHO05D000915 5.0e-06 53.5 47 53.2
Sopen06g034090 Solanum pennellii HOM05D000061 ORTHO05D000915 5.0e-06 53.5 47 53.2
TAR369G0740 Trochodendron aralioides HOM05D000061 ORTHO05D000915 5.0e-06 53.5 47 59.6
vmacro06872 Vaccinium macrocarpon HOM05D000061 ORTHO05D000915 5.0e-06 53.5 39 59.0
arahy.Tifrunner.gnm1.ann1.AI0BYL Arachis hypogaea HOM05D000061 ORTHO05D000915 6.5e-06 53.1 47 53.2
arahy.Tifrunner.gnm1.ann1.VFJD86 Arachis hypogaea HOM05D000061 ORTHO05D000915 6.5e-06 53.1 47 53.2
Ciclev10031065m.g Citrus clementina HOM05D000061 ORTHO05D000915 6.5e-06 53.1 47 51.1
Haze_24496 Corylus avellana HOM05D000061 ORTHO05D000915 6.5e-06 53.1 47 55.3
Nn8g40055 Nelumbo nucifera HOM05D000061 ORTHO05D000915 6.5e-06 53.1 39 64.1
Peaxi162Scf00390g00226 Petunia axillaris HOM05D000061 ORTHO05D000915 6.5e-06 53.1 47 53.2
Aqoxy2G00558 Aquilegia oxysepala HOM05D000061 ORTHO05D000915 8.5e-06 52.8 47 55.3
BcaNung05899 Brassica carinata HOM05D000061 ORTHO05D000915 8.5e-06 52.8 43 55.8
BcaNung06361 Brassica carinata HOM05D000061 ORTHO05D000915 8.5e-06 52.8 43 55.8
A06p35700 Brassica napus HOM05D000061 ORTHO05D000915 8.5e-06 52.8 43 55.8
C07p42860 Brassica napus HOM05D000061 ORTHO05D000915 8.5e-06 52.8 43 55.8
BolC7t44813H Brassica oleracea HOM05D000061 ORTHO05D000915 8.5e-06 52.8 43 55.8
BraA06t26494Z Brassica rapa HOM05D000061 ORTHO05D000915 8.5e-06 52.8 43 55.8
CARHR188530 Cardamine hirsuta HOM05D000061 ORTHO05D000915 8.5e-06 52.8 45 51.1
CiPaw.13G023500 Carya illinoinensis HOM05D000061 ORTHO05D000915 8.5e-06 52.8 43 65.1
Cc01_g15460 Coffea canephora HOM05D000061 ORTHO05D000915 8.5e-06 52.8 46 56.5
FAN01G0720 Fragaria x ananassa HOM05D000061 ORTHO05D000915 8.5e-06 52.8 45 55.6
Gorai.012G012600 Gossypium raimondii HOM05D000061 ORTHO05D000915 8.5e-06 52.8 39 56.4
Manes.10G002640 Manihot esculenta HOM05D000061 ORTHO05D000915 8.5e-06 52.8 39 59.0
Nitab4.5_0004425g0020 Nicotiana tabacum HOM05D000061 ORTHO05D000915 8.5e-06 52.8 47 61.7
PSO384G0079 Papaver somniferum HOM05D000061 ORTHO05D000915 8.5e-06 52.8 39 64.1
Rhsim01G0245300 Rhododendron simsii HOM05D000061 ORTHO05D000915 8.5e-06 52.8 39 64.1
RcHm_v2.0_Chr3g0448361 Rosa chinensis HOM05D000061 ORTHO05D000915 8.5e-06 52.8 39 64.1
Sp2g22550 Schrenkiella parvula HOM05D000061 ORTHO05D000915 8.5e-06 52.8 43 55.8
Sopen01g035600 Solanum pennellii HOM05D000061 ORTHO05D000915 8.5e-06 52.8 47 57.4


User provided reference genes

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