Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 4.2e-59 231.5 148 100.0
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 2.0e-53 212.6 148 93.2
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 6.8e-49 197.6 150 89.3
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 3.4e-48 195.3 150 88.0
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 1.1e-43 180.3 151 83.4
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 2.1e-42 176.0 148 76.4
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 2.8e-42 175.6 148 77.7
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 1.2e-40 170.2 151 76.8
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 9.8e-40 167.2 148 70.9
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 1.3e-39 166.8 151 78.8
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 4.5e-37 158.3 155 77.4
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 5.9e-37 157.9 155 77.4
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 1.4e-33 146.7 155 55.5
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 1.3e-31 140.2 148 75.7
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 1.3e-31 140.2 148 70.3
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 2.2e-31 139.4 148 74.3
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 4.9e-31 138.3 151 51.0
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 7.0e-30 134.4 148 65.5
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 1.2e-29 133.7 157 58.0
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 2.7e-29 132.5 148 64.9
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 3.5e-29 132.1 147 52.4
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 3.5e-29 132.1 151 70.9
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 7.8e-29 131.0 148 52.7
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 7.8e-29 131.0 148 52.7
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 1.7e-28 129.8 160 55.0
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 3.9e-28 128.6 159 64.2
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 1.1e-27 127.1 151 70.2
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.1e-27 127.1 151 60.3
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.1e-27 127.1 151 70.2
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 1.9e-27 126.3 156 67.9
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 7.3e-27 124.4 159 46.5
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 1.2e-26 123.6 149 67.1
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 2.1e-26 122.9 142 50.0
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 4.7e-26 121.7 160 48.8
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 6.2e-26 121.3 157 45.9
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 1.4e-25 120.2 154 64.3
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 4.0e-25 118.6 93 65.6
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 5.2e-25 118.2 150 50.0
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 6.8e-25 117.9 159 65.4
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 1.5e-24 116.7 159 44.7
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 1.5e-24 116.7 148 63.5
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 2.0e-24 116.3 158 58.2
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 3.4e-24 115.5 155 64.5
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 3.4e-24 115.5 159 44.0
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 9.8e-24 114.0 150 49.3
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 1.3e-23 113.6 155 63.2
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 1.3e-23 113.6 160 64.4
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 1.7e-23 113.2 159 43.4
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 2.9e-23 112.5 158 65.2
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 3.7e-23 112.1 151 66.9
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 4.9e-23 111.7 148 63.5
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 4.9e-23 111.7 157 65.6
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 6.4e-23 111.3 150 55.3
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 8.3e-23 110.9 158 61.4
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.9e-22 109.8 151 66.2
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 3.2e-22 109.0 163 55.2
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 3.2e-22 109.0 152 63.2
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 7.0e-22 107.8 165 56.4
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 7.0e-22 107.8 156 49.4
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 1.2e-21 107.1 151 66.9
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 1.0e-20 104.0 158 64.6
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 3.9e-20 102.1 93 61.3
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 6.6e-20 101.3 156 55.1
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 6.6e-20 101.3 157 50.3
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 1.1e-19 100.5 157 54.1
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 3.6e-18 95.5 154 53.9
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 6.2e-18 94.7 154 52.6
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 8.1e-18 94.4 157 57.3
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 1.4e-17 93.6 95 57.9
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 1.8e-17 93.2 165 50.3
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 4.0e-17 92.0 95 58.9
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 4.0e-17 92.0 94 60.6
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 6.8e-17 91.3 161 50.9
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 1.5e-16 90.1 161 55.9
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 1.5e-16 90.1 153 58.2
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 2.6e-16 89.4 157 40.1
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 3.4e-16 89.0 95 55.8
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 4.4e-16 88.6 108 51.9
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 5.8e-16 88.2 94 52.1
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 1.7e-15 86.7 95 56.8
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 1.7e-15 86.7 108 50.9
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 2.2e-15 86.3 94 56.4
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 2.2e-15 86.3 94 56.4
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 2.2e-15 86.3 94 56.4
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 2.9e-15 85.9 110 50.9
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 2.9e-15 85.9 91 57.1
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 3.7e-15 85.5 110 50.0
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 3.7e-15 85.5 148 41.2
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 3.7e-15 85.5 99 53.5
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 4.9e-15 85.1 86 57.0
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 6.4e-15 84.7 110 50.0
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 6.4e-15 84.7 94 56.4
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 1.9e-14 83.2 95 54.7
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 2.4e-14 82.8 95 54.7
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 4.1e-14 82.0 101 47.5
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 2.7e-13 79.3 151 58.3
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 2.7e-13 79.3 98 52.0
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 3.0e-12 75.9 102 47.1
C05p26280 Brassica napus HOM05D006794 ORTHO05D008322 3.0e-12 75.9 88 56.8
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 6.6e-12 74.7 153 43.8
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 4.3e-11 72.0 142 38.0
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 7.3e-11 71.2 143 53.8
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 1.6e-10 70.1 63 65.1
Haze_13383 Corylus avellana HOM05D006794 ORTHO05D008322 1.6e-10 70.1 83 55.4
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 6.8e-09 64.7 101 41.6
VMungo0331G1645 Vigna mungo HOM05D006794 ORTHO05D008322 6.8e-09 64.7 62 56.5
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 3.4e-08 62.4 125 47.2
VMungo0251G0268 Vigna mungo HOM05D006794 ORTHO05D008322 3.4e-08 62.4 62 54.8
VMungo1127G0591 Vigna mungo HOM05D001475 ORTHO05D001525 4.4e-08 62.0 62 54.8
SGA_v2.0_scaffold172G39018 Striga asiatica HOM05D006794 ORTHO05D008322 5.8e-08 61.6 128 39.8


User provided reference genes

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