Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G097400 Glycine max HOM05D003094 ORTHO05D003482 5.3e-63 244.2 125 100.0
Phvul.004G153600 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 9.4e-44 180.3 125 76.0
Glyma.09G180400 Glycine max HOM05D003094 ORTHO05D003482 1.2e-43 179.9 110 87.3
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 2.0e-38 162.5 126 74.6
Lj2g0001179 Lotus japonicus HOM05D003094 ORTHO05D003482 1.2e-25 120.2 146 54.1
Medtr6g082590 Medicago truncatula HOM05D003094 ORTHO05D003482 5.4e-23 111.3 128 53.9
Psat1g035120 Pisum sativum HOM05D003094 ORTHO05D003482 1.7e-21 106.3 155 47.1
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 2.5e-20 102.4 149 50.3
Ca_25471_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 2.5e-20 102.4 113 56.6
Ca_29690_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 2.5e-20 102.4 113 56.6
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 3.6e-19 98.6 151 49.7
TPR.G25985 Trifolium pratense HOM05D003094 ORTHO05D003482 4.0e-18 95.1 92 58.7
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 1.2e-11 73.6 83 53.0
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 2.8e-11 72.4 79 53.2
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 8.1e-11 70.9 131 36.6
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 2.3e-10 69.3 71 57.7
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 8.9e-10 67.4 77 53.2
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 2.0e-09 66.2 127 40.9
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.6e-09 65.9 79 45.6
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 4.4e-09 65.1 82 47.6
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 5.8e-09 64.7 79 44.3
Lalb_Chr22g0353211 Lupinus albus HOM05D003094 ORTHO05D003482 7.5e-09 64.3 38 84.2
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 9.9e-09 63.9 82 53.7
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 9.9e-09 63.9 82 53.7
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 9.9e-09 63.9 151 37.1
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.3e-08 63.5 79 43.0
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 1.3e-08 63.5 125 37.6
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.2e-08 62.8 103 42.7
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 3.7e-08 62.0 139 34.5
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 4.9e-08 61.6 78 47.4
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.9e-08 61.6 84 41.7
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 6.4e-08 61.2 149 36.9
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.4e-08 61.2 77 48.1
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 6.4e-08 61.2 143 35.7
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 6.4e-08 61.2 143 38.5
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 6.4e-08 61.2 72 48.6
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.4e-07 60.1 152 34.2
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 1.4e-07 60.1 69 55.1
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 1.9e-07 59.7 116 41.4
PGR083G0382 Punica granatum HOM05D003094 ORTHO05D003482 2.4e-07 59.3 137 37.2
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 2.4e-07 59.3 77 44.2
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 3.2e-07 58.9 94 38.3
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.2e-07 58.9 78 48.7
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.2e-07 58.9 78 48.7
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 3.2e-07 58.9 78 46.2
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 3.2e-07 58.9 125 35.2
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 3.2e-07 58.9 79 44.3
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 5.4e-07 58.2 78 43.6
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 5.4e-07 58.2 113 38.1
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 5.4e-07 58.2 150 36.7
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 5.4e-07 58.2 126 32.5
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.4e-07 58.2 78 47.4
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.4e-07 58.2 78 47.4
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.4e-07 58.2 78 47.4
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 5.4e-07 58.2 78 46.2
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 7.1e-07 57.8 127 34.6
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 9.2e-07 57.4 78 47.4
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 9.2e-07 57.4 136 32.4
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 9.2e-07 57.4 139 31.7
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 9.2e-07 57.4 85 43.5
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.2e-06 57.0 92 40.2
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.2e-06 57.0 75 46.7
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 1.2e-06 57.0 153 32.7
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.2e-06 57.0 66 43.9
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 1.2e-06 57.0 141 36.9
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.2e-06 57.0 79 43.0
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.2e-06 57.0 125 38.4
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.6e-06 56.6 78 43.6
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 1.6e-06 56.6 67 49.3
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 2.1e-06 56.2 78 43.6
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.1e-06 56.2 107 33.6
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.1e-06 56.2 150 34.0
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 2.7e-06 55.8 72 48.6
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 2.7e-06 55.8 154 35.7
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 2.7e-06 55.8 48 54.2
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 3.5e-06 55.5 66 47.0
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 3.5e-06 55.5 78 44.9
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 4.6e-06 55.1 79 45.6
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 4.6e-06 55.1 104 36.5
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.6e-06 55.1 78 44.9
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.6e-06 55.1 78 46.2
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 4.6e-06 55.1 153 34.0
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 4.6e-06 55.1 78 44.9
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 6.0e-06 54.7 155 31.0
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 6.0e-06 54.7 126 31.7
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 6.0e-06 54.7 96 43.8
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 6.0e-06 54.7 79 43.0
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 7.8e-06 54.3 79 45.6
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 7.8e-06 54.3 79 45.6
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 7.8e-06 54.3 120 35.0
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 7.8e-06 54.3 78 41.0
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 7.8e-06 54.3 150 34.0
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 7.8e-06 54.3 107 32.7


User provided reference genes

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