Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 7.7e-85 317.0 149 100.0
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 4.6e-53 211.5 97 99.0
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 2.3e-52 209.1 97 97.9
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 5.0e-52 208.0 96 99.0
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 8.6e-52 207.2 96 97.9
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 1.5e-51 206.5 96 97.9
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 4.3e-51 204.9 96 95.8
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 1.2e-50 203.4 97 94.8
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 1.2e-50 203.4 97 94.8
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 1.6e-50 203.0 97 93.8
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 1.2e-48 196.8 97 92.8
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 4.4e-48 194.9 97 89.7
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 4.4e-48 194.9 133 72.9
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 5.8e-48 194.5 97 88.7
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 5.8e-48 194.5 97 90.7
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 7.5e-48 194.1 97 89.7
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 9.8e-48 193.7 97 88.7
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.3e-47 193.4 97 88.7
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.3e-47 193.4 97 88.7
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.3e-47 193.4 97 88.7
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.9e-47 192.2 97 87.6
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 4.9e-47 191.4 97 87.6
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 6.4e-47 191.0 97 87.6
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 8.3e-47 190.7 102 86.3
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 8.3e-47 190.7 97 88.7
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 8.3e-47 190.7 100 87.0
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 1.4e-46 189.9 97 90.7
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 1.4e-46 189.9 97 90.7
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 1.4e-46 189.9 97 89.7
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 1.4e-46 189.9 99 87.9
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 1.4e-46 189.9 97 87.6
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 1.4e-46 189.9 97 86.6
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.9e-46 189.5 97 87.6
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.9e-46 189.5 97 87.6
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 4.1e-46 188.3 97 86.6
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 4.1e-46 188.3 97 86.6
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 5.4e-46 188.0 97 87.6
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 5.4e-46 188.0 97 86.6
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 9.2e-46 187.2 97 88.7
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 9.2e-46 187.2 97 85.6
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 9.2e-46 187.2 97 87.6
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 1.2e-45 186.8 96 89.6
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 1.6e-45 186.4 96 87.5
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 2.0e-45 186.0 97 87.6
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 2.0e-45 186.0 97 85.6
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 2.7e-45 185.7 139 68.3
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 4.6e-45 184.9 97 84.5
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 2.3e-44 182.6 97 83.5
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 2.3e-44 182.6 97 83.5
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 6.6e-44 181.0 97 87.6
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 6.6e-44 181.0 97 80.4
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 8.6e-44 180.6 116 73.3
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 8.6e-44 180.6 97 84.5
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 8.6e-44 180.6 97 84.5
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.1e-43 180.3 122 72.1
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 1.5e-43 179.9 97 86.6
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 1.5e-43 179.9 97 86.6
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.9e-43 179.5 97 83.5
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 1.9e-43 179.5 97 83.5
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.9e-43 179.5 97 82.5
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 3.3e-43 178.7 97 82.5
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 3.3e-43 178.7 97 82.5
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 3.3e-43 178.7 97 82.5
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 3.3e-43 178.7 123 69.9
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 4.3e-43 178.3 97 82.5
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 4.3e-43 178.3 97 82.5
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 4.3e-43 178.3 97 82.5
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 4.3e-43 178.3 97 82.5
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 4.3e-43 178.3 97 86.6
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 4.3e-43 178.3 106 78.3
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 4.3e-43 178.3 106 78.3
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 4.3e-43 178.3 106 78.3
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 4.3e-43 178.3 106 78.3
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 4.3e-43 178.3 106 78.3
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 4.3e-43 178.3 97 81.4
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 5.6e-43 177.9 97 82.5
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 5.6e-43 177.9 97 82.5
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 5.6e-43 177.9 97 84.5
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 7.3e-43 177.6 97 82.5
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 7.3e-43 177.6 97 82.5
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 7.3e-43 177.6 113 74.3
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 9.5e-43 177.2 97 81.4
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 9.5e-43 177.2 97 81.4
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 9.5e-43 177.2 97 82.5
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 1.2e-42 176.8 97 81.4
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 1.2e-42 176.8 97 81.4
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 1.2e-42 176.8 97 81.4
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 1.2e-42 176.8 97 81.4
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.6e-42 176.4 97 81.4
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 2.1e-42 176.0 97 84.5
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 2.1e-42 176.0 97 80.4
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 4.7e-42 174.9 97 80.4
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 6.2e-42 174.5 97 80.4
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 6.2e-42 174.5 97 80.4
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 6.2e-42 174.5 97 81.4
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 8.1e-42 174.1 97 81.4
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 8.1e-42 174.1 97 82.5
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 8.1e-42 174.1 97 84.5
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 1.1e-41 173.7 97 80.4
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 1.1e-41 173.7 96 84.4
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 1.1e-41 173.7 97 81.4
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.1e-41 173.7 97 81.4
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 1.1e-41 173.7 97 80.4
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.4e-41 173.3 97 79.4
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.4e-41 173.3 97 79.4
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 1.4e-41 173.3 97 83.5
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 2.3e-41 172.6 97 81.4
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 3.1e-41 172.2 97 77.3
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 3.1e-41 172.2 97 80.4
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 3.1e-41 172.2 97 80.4
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 3.1e-41 172.2 97 80.4
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 3.1e-41 172.2 97 80.4
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 3.1e-41 172.2 97 80.4
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 4.0e-41 171.8 97 79.4
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 5.2e-41 171.4 97 81.4
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 6.8e-41 171.0 97 78.4
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 1.2e-40 170.2 97 80.4
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 1.2e-40 170.2 97 80.4
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 1.5e-40 169.9 97 80.4
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 1.5e-40 169.9 97 80.4
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 1.5e-40 169.9 97 77.3
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 2.0e-40 169.5 97 80.4
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 4.4e-40 168.3 93 78.5
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 1.3e-39 166.8 97 77.3
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 1.3e-39 166.8 93 78.5
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 2.9e-39 165.6 97 76.3
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 3.7e-39 165.2 95 77.9
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 4.9e-39 164.9 93 76.3
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 4.9e-39 164.9 93 77.4
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 6.4e-39 164.5 97 80.4
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 1.4e-38 163.3 97 74.2
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 1.2e-37 160.2 97 73.2
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.9e-35 152.9 94 73.4
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.5e-32 143.3 79 77.2
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 5.8e-32 141.4 68 91.2
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 7.6e-32 141.0 85 80.0
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 2.7e-29 132.5 68 83.8
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.1e-27 127.1 93 62.4
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 1.1e-27 127.1 75 80.0
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 1.1e-27 127.1 75 76.0
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.9e-27 126.3 93 62.4
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 1.2e-26 123.6 92 64.1
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 3.1e-25 119.0 83 65.1
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 5.2e-25 118.2 72 75.0
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 1.5e-24 116.7 69 79.7
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 2.6e-24 115.9 71 74.6
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 3.8e-23 112.1 84 57.1
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 3.2e-22 109.0 86 58.1
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 2.5e-19 99.4 97 54.6
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 3.6e-18 95.5 49 81.6
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 9.9e-16 87.4 84 47.6
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 5.4e-14 81.6 67 61.2
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 9.3e-14 80.9 54 70.4
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 2.7e-13 79.3 50 72.0
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 6.2e-10 68.2 84 40.5
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 8.1e-10 67.8 37 83.8
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 6.9e-09 64.7 37 81.1
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 6.9e-09 64.7 49 61.2
GSVIVG01008282001 Vitis vinifera HOM05D004512 ORTHO05D005355 5.5e-06 55.1 28 82.1


User provided reference genes

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