Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 9.6e-40 166.4 85 100.0
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 1.1e-30 136.3 69 100.0
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 1.1e-22 109.8 67 83.6
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 1.8e-22 109.0 68 76.5
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 2.4e-22 108.6 68 75.0
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 2.4e-22 108.6 68 75.0
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 2.6e-21 105.1 70 74.3
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 5.8e-21 104.0 66 74.2
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 1.7e-20 102.4 66 72.7
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 6.5e-20 100.5 65 75.4
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 7.1e-19 97.1 61 77.0
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 9.3e-19 96.7 70 67.1
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 3.5e-18 94.7 72 70.8
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 1.0e-17 93.2 65 67.7
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 1.8e-17 92.4 71 66.2
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 5.1e-17 90.9 62 69.4
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 1.5e-16 89.4 61 73.8
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 1.5e-16 89.4 64 70.3
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 1.5e-16 89.4 60 75.0
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 1.5e-16 89.4 60 75.0
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 1.9e-16 89.0 61 68.9
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 3.3e-16 88.2 60 73.3
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 3.3e-16 88.2 64 70.3
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 9.7e-16 86.7 64 65.6
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 2.8e-15 85.1 64 67.2
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 3.7e-15 84.7 64 67.2
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 6.3e-15 84.0 60 68.3
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 1.4e-14 82.8 60 68.3
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 2.4e-14 82.0 72 62.5
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 4.1e-14 81.3 64 64.1
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 4.1e-14 81.3 58 65.5
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 6.9e-14 80.5 60 63.3
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 9.0e-14 80.1 60 65.0
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 9.0e-14 80.1 60 63.3
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.2e-13 79.7 74 55.4
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 4.5e-13 77.8 74 54.1
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 1.3e-12 76.3 64 57.8
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 2.2e-12 75.5 49 69.4
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 2.2e-12 75.5 49 67.3
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 2.9e-12 75.1 60 58.3
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 3.8e-12 74.7 60 65.0
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 5.0e-12 74.3 61 59.0
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 5.0e-12 74.3 61 59.0
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 5.0e-12 74.3 52 63.5
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 6.5e-12 73.9 61 60.7
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 8.5e-12 73.6 61 59.0
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 1.1e-11 73.2 61 59.0
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 1.1e-11 73.2 57 64.9
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 1.1e-11 73.2 50 66.0
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 1.1e-11 73.2 50 66.0
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 1.4e-11 72.8 58 62.1
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 1.4e-11 72.8 57 61.4
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 1.9e-11 72.4 66 56.1
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 1.9e-11 72.4 65 50.8
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 2.5e-11 72.0 62 53.2
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 2.5e-11 72.0 66 53.0
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 2.5e-11 72.0 51 62.7
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 3.2e-11 71.6 61 60.7
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 3.2e-11 71.6 55 60.0
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 3.2e-11 71.6 50 64.0
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 4.2e-11 71.2 68 54.4
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 4.2e-11 71.2 66 53.0
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 5.5e-11 70.9 59 54.2
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 7.2e-11 70.5 56 57.1
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 7.2e-11 70.5 72 48.6
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 7.2e-11 70.5 56 57.1
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 9.4e-11 70.1 62 56.5
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 1.2e-10 69.7 56 55.4
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 1.2e-10 69.7 66 54.5
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 1.2e-10 69.7 66 53.0
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 1.6e-10 69.3 56 55.4
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 1.6e-10 69.3 56 55.4
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 2.1e-10 68.9 70 48.6
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 2.1e-10 68.9 68 52.9
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 2.7e-10 68.6 66 50.0
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 2.7e-10 68.6 69 50.7
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 3.6e-10 68.2 65 58.5
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 3.0e-09 65.1 60 53.3
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 8.8e-09 63.5 65 47.7
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 3.3e-08 61.6 51 52.9
Zm00001eb388110 Zea mays HOM05D007790 ORTHO05D009880 9.7e-08 60.1 39 61.5
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 2.2e-07 58.9 56 53.6
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 3.7e-07 58.2 73 45.2
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 6.3e-07 57.4 60 46.7
PGSC0003DMG401005708 Solanum tuberosum HOM05D007790 ORTHO05D009880 8.2e-07 57.0 32 71.9
HanXRQChr05g0152891 Helianthus annuus HOM05D007790 ORTHO05D009880 5.3e-06 54.3 51 54.9


User provided reference genes

Program Settings