Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 6.0e-58 227.3 112 100.0
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 1.2e-42 176.4 113 83.2
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 1.7e-36 156.0 113 73.5
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 7.4e-24 114.0 116 57.8
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 3.7e-23 111.7 118 59.3
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 4.8e-23 111.3 114 56.1
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 4.1e-22 108.2 116 59.5
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 5.9e-21 104.4 117 58.1
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 2.7e-18 95.5 113 54.0
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 6.1e-18 94.4 102 52.9
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 3.0e-17 92.0 94 55.3
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 3.0e-17 92.0 94 55.3
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 4.0e-17 91.7 94 56.4
Psat7g034120 Pisum sativum HOM05D007326 ORTHO05D009048 8.8e-17 90.5 99 58.6
arahy.Tifrunner.gnm1.ann1.8E5M3M Arachis hypogaea HOM05D007326 ORTHO05D009048 1.7e-15 86.3 108 50.9
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 2.8e-15 85.5 87 57.5
arahy.Tifrunner.gnm1.ann1.SUR8QF Arachis hypogaea HOM05D007326 ORTHO05D009048 1.1e-14 83.6 111 48.6
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 1.8e-14 82.8 96 56.2
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 1.8e-14 82.8 98 49.0
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 3.1e-14 82.0 92 52.2
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 4.1e-14 81.6 104 47.1
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 7.0e-14 80.9 91 52.7
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 7.0e-14 80.9 96 51.0
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 9.1e-14 80.5 91 52.7
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 2.0e-13 79.3 95 49.5
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 2.7e-13 79.0 123 43.9
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 3.5e-13 78.6 84 50.0
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 3.5e-13 78.6 93 49.5
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 7.7e-13 77.4 91 48.4
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 7.7e-13 77.4 93 50.5
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 1.0e-12 77.0 117 47.0
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 1.3e-12 76.6 83 53.0
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 1.7e-12 76.3 74 55.4
Prupe.2G311900 Prunus persica HOM05D007326 ORTHO05D009048 2.9e-12 75.5 91 49.5
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 2.9e-12 75.5 89 53.9
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 5.0e-12 74.7 109 43.1
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 8.5e-12 73.9 99 47.5
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 1.1e-11 73.6 36 86.1
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 1.1e-11 73.6 95 48.4
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 1.1e-11 73.6 88 50.0
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 1.5e-11 73.2 91 46.2
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 1.5e-11 73.2 114 45.6
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 3.2e-11 72.0 101 45.5
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 4.2e-11 71.6 85 45.9
SGA_v2.0_scaffold105G30435 Striga asiatica HOM05D007326 ORTHO05D009048 4.2e-11 71.6 101 45.5
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 5.5e-11 71.2 88 48.9
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 5.5e-11 71.2 96 47.9
Aa31LG1G16060 Aethionema arabicum HOM05D007326 ORTHO05D009048 7.2e-11 70.9 83 51.8
CSS0006442 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 7.2e-11 70.9 95 47.4
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 1.2e-10 70.1 98 43.9
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 2.1e-10 69.3 32 87.5
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 2.1e-10 69.3 83 50.6
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 2.1e-10 69.3 32 87.5
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 2.7e-10 68.9 90 47.8
Lalb_Chr05g0213391 Lupinus albus HOM05D007326 ORTHO05D009048 2.7e-10 68.9 97 51.5
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 2.7e-10 68.9 41 75.6
EL10Ac9g21379 Beta vulgaris HOM05D007326 ORTHO05D009048 3.6e-10 68.6 35 82.9
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 6.1e-10 67.8 32 84.4
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 6.1e-10 67.8 35 77.1
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 6.1e-10 67.8 87 46.0
THA.LOC104819263 Tarenaya hassleriana HOM05D007326 ORTHO05D009048 6.1e-10 67.8 82 47.6
FAN06G2911 Fragaria x ananassa HOM05D007326 ORTHO05D009048 8.0e-10 67.4 94 50.0
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 8.0e-10 67.4 74 51.4
Hma1.2p1_0538F.1_g174400 Hydrangea macrophylla HOM05D007326 ORTHO05D009048 1.0e-09 67.0 88 45.5
RcHm_v2.0_Chr1g0381021 Rosa chinensis HOM05D007326 ORTHO05D009048 1.0e-09 67.0 87 49.4
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 1.0e-09 67.0 110 39.1
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 1.4e-09 66.6 91 40.7
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 1.4e-09 66.6 91 48.4
CARHR280100 Cardamine hirsuta HOM05D007326 ORTHO05D009048 1.8e-09 66.2 32 81.2
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 1.8e-09 66.2 40 75.0
SEGI_38766 Sequoiadendron giganteum HOM05D007326 ORTHO05D009048 2.3e-09 65.9 35 77.1
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 3.0e-09 65.5 55 63.6
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 3.0e-09 65.5 83 44.6
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 4.0e-09 65.1 95 43.2
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 5.2e-09 64.7 93 44.1
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 6.8e-09 64.3 101 41.6
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 6.8e-09 64.3 95 48.4
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 6.8e-09 64.3 85 44.7
MCO04G224 Micromonas commoda HOM05D007326 ORTHO05D009048 6.8e-09 64.3 100 44.0
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 6.8e-09 64.3 46 67.4
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 8.8e-09 63.9 97 46.4
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 8.8e-09 63.9 85 47.1
unitig_8.g3560 Utricularia gibba HOM05D000146 ORTHO05D000178 8.8e-09 63.9 101 38.6
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 1.2e-08 63.5 84 44.0
FvH4_7g31800 Fragaria vesca HOM05D000354 ORTHO05D000717 2.6e-08 62.4 75 53.3
FAN10G2940 Fragaria x ananassa HOM05D007326 ORTHO05D009048 3.4e-08 62.0 95 47.4
Carub.0008s2698 Capsella rubella HOM05D007326 ORTHO05D009048 4.4e-08 61.6 83 43.4
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 5.7e-08 61.2 86 44.2
Cre02.g073800 Chlamydomonas reinhardtii HOM05D007326 ORTHO05D009048 5.7e-08 61.2 45 62.2
FAN03G0879 Fragaria x ananassa HOM05D007326 ORTHO05D009048 5.7e-08 61.2 89 48.3
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 7.5e-08 60.8 63 50.8
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 1.3e-07 60.1 89 46.1
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 1.3e-07 60.1 89 46.1
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 1.3e-07 60.1 83 45.8
Mapoly0007s0050 Marchantia polymorpha HOM05D007326 ORTHO05D009048 2.2e-07 59.3 86 40.7
CsaV3_5G000570 Cucumis sativus L. HOM05D007326 ORTHO05D009048 2.8e-07 58.9 86 43.0
C03p59560 Brassica napus HOM05D007326 ORTHO05D009048 3.7e-07 58.5 99 41.4
BolC3t18219H Brassica oleracea HOM05D007326 ORTHO05D009048 3.7e-07 58.5 99 41.4
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 3.7e-07 58.5 96 38.5
PRCOL_00002099 Prasinoderma coloniale HOM05D007326 ORTHO05D009048 8.3e-07 57.4 31 77.4
Sp2g29160 Schrenkiella parvula HOM05D007326 ORTHO05D009048 8.3e-07 57.4 87 43.7
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 1.1e-06 57.0 90 38.9
Migut.F01037 Erythranthe guttata HOM05D007326 ORTHO05D009048 1.8e-06 56.2 74 45.9
MELO3C005879.2 Cucumis melo HOM05D007326 ORTHO05D009048 4.1e-06 55.1 87 41.4
Rhsim03G0206100 Rhododendron simsii HOM05D043765 ORTHO05D009048 4.1e-06 55.1 84 46.4
Rhsim03G0207100 Rhododendron simsii HOM05D043765 ORTHO05D009048 4.1e-06 55.1 84 46.4
HPP92_020021 Vanilla planifolia HOM05D007326 ORTHO05D009048 4.1e-06 55.1 89 43.8
CBR_g41366 Chara braunii HOM05D007326 ORTHO05D009048 5.4e-06 54.7 50 62.0


User provided reference genes

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