Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G076500 Glycine max HOM05D002113 ORTHO05D002124 5.7e-89 330.9 164 100.0
Glyma.03G016300 Glycine max HOM05D002113 ORTHO05D002124 2.8e-43 179.1 142 68.3
Glyma.03G016100 Glycine max HOM05D002113 ORTHO05D002124 2.4e-39 166.0 151 62.3
Lalb_Chr10g0097391 Lupinus albus HOM05D002113 ORTHO05D002124 4.7e-27 125.2 157 49.0
Phvul.010G090000 Phaseolus vulgaris HOM05D002113 ORTHO05D002124 2.3e-26 122.9 122 54.9
Glyma.07G076600 Glycine max HOM05D002113 ORTHO05D002124 1.2e-25 120.6 121 57.0
Phvul.010G090100 Phaseolus vulgaris HOM05D002113 ORTHO05D002124 7.5e-25 117.9 126 54.0
Lj3g0006089 Lotus japonicus HOM05D002113 ORTHO05D002124 3.7e-24 115.5 169 48.5
VMungo0331G0862 Vigna mungo HOM05D002113 ORTHO05D002124 6.4e-24 114.8 136 50.0
Medtr8g432470 Medicago truncatula HOM05D002113 ORTHO05D002124 3.2e-23 112.5 149 47.7
Medtr8g432490 Medicago truncatula HOM05D002113 ORTHO05D002124 7.1e-23 111.3 140 47.9
Medtr8g432450 Medicago truncatula HOM05D002113 ORTHO05D002124 9.2e-23 110.9 149 47.0
Glyma.03G016400 Glycine max HOM05D002113 ORTHO05D002124 2.1e-22 109.8 135 55.6
arahy.Tifrunner.gnm1.ann1.6ER5HC Arachis hypogaea HOM05D002113 ORTHO05D002124 1.0e-21 107.5 155 45.2
Ca_23817_v3 Cicer arietinum L. HOM05D002113 ORTHO05D002124 1.0e-21 107.5 160 43.8
Medtr3g064780 Medicago truncatula HOM05D002113 ORTHO05D002124 1.3e-21 107.1 141 47.5
Medtr8g432460 Medicago truncatula HOM05D002113 ORTHO05D002124 1.7e-21 106.7 132 47.0
TPR.G1492 Trifolium pratense HOM05D002113 ORTHO05D002124 1.7e-21 106.7 156 43.6
Medtr8g432420 Medicago truncatula HOM05D002113 ORTHO05D002124 5.1e-21 105.1 125 48.0
Medtr8g432440 Medicago truncatula HOM05D002113 ORTHO05D002124 5.1e-21 105.1 125 48.0
Psat4g201480 Pisum sativum HOM05D002113 ORTHO05D002124 5.1e-21 105.1 132 47.0
arahy.Tifrunner.gnm1.ann1.7BZT72 Arachis hypogaea HOM05D002113 ORTHO05D002124 3.3e-20 102.4 142 45.8
arahy.Tifrunner.gnm1.ann1.IAG7Q0 Arachis hypogaea HOM05D002113 ORTHO05D002124 4.3e-20 102.1 154 46.1
arahy.Tifrunner.gnm1.ann1.LIT6E9 Arachis hypogaea HOM05D002113 ORTHO05D002124 2.1e-19 99.8 162 43.8
TPR.G27946 Trifolium pratense HOM05D002113 ORTHO05D002124 2.1e-19 99.8 129 45.0
arahy.Tifrunner.gnm1.ann1.J9CJSZ Arachis hypogaea HOM05D002113 ORTHO05D002124 1.7e-16 90.1 161 38.5
Lalb_Chr10g0097381 Lupinus albus HOM05D002113 ORTHO05D002124 6.4e-16 88.2 141 38.3
Lalb_Chr17g0339961 Lupinus albus HOM05D002113 ORTHO05D002124 2.4e-15 86.3 146 40.4
Medtr8g432480 Medicago truncatula HOM05D002113 ORTHO05D002124 7.1e-15 84.7 133 39.8
Psat4g201600 Pisum sativum HOM05D002113 ORTHO05D002124 9.2e-15 84.3 133 40.6
TPR.G1532 Trifolium pratense HOM05D002113 ORTHO05D002124 9.2e-15 84.3 133 39.1
Psat4g201520 Pisum sativum HOM05D002113 ORTHO05D002124 2.7e-14 82.8 149 40.9
Lj1g0016318 Lotus japonicus HOM05D002113 ORTHO05D002124 4.6e-14 82.0 128 42.2
Glyma.03G016000 Glycine max HOM05D002113 ORTHO05D002124 6.0e-14 81.6 129 39.5
Phvul.002G180800 Phaseolus vulgaris HOM05D002113 ORTHO05D002124 7.8e-14 81.3 132 38.6
Phvul.002G180900 Phaseolus vulgaris HOM05D002113 ORTHO05D002124 7.8e-14 81.3 132 38.6
Psat0s2294g0040 Pisum sativum HOM05D002113 ORTHO05D002124 1.0e-13 80.9 135 38.5
Nitab4.5_0005423g0040 Nicotiana tabacum HOM05D002113 ORTHO05D002124 3.0e-13 79.3 136 39.7
Glyma.18G225300 Glycine max HOM05D002113 ORTHO05D002124 6.6e-13 78.2 128 40.6
arahy.Tifrunner.gnm1.ann1.3PQ3AI Arachis hypogaea HOM05D002113 ORTHO05D002124 8.7e-13 77.8 142 39.4
CAN.G170.15 Capsicum annuum HOM05D002113 ORTHO05D002124 1.1e-12 77.4 139 38.8
Glyma.07G076300 Glycine max HOM05D002113 ORTHO05D002124 1.1e-12 77.4 128 37.5
Glyma.03G016200 Glycine max HOM05D002113 ORTHO05D002124 1.5e-12 77.0 137 38.0
Glyma.07G076400 Glycine max HOM05D002113 ORTHO05D002124 1.5e-12 77.0 141 40.4
Phvul.010G089900 Phaseolus vulgaris HOM05D002113 ORTHO05D002124 4.3e-12 75.5 131 38.9
Lalb_Chr10g0097371 Lupinus albus HOM05D002113 ORTHO05D002124 5.6e-12 75.1 131 38.2
arahy.Tifrunner.gnm1.ann1.HN6722 Arachis hypogaea HOM05D002113 ORTHO05D002124 7.3e-12 74.7 142 38.0
Cfa004203 Carpinus fangiana HOM05D002113 ORTHO05D002124 7.3e-12 74.7 133 36.1
Phvul.010G093400 Phaseolus vulgaris HOM05D002113 ORTHO05D002124 7.3e-12 74.7 127 37.0
VMungo0331G0628 Vigna mungo HOM05D002113 ORTHO05D002124 7.3e-12 74.7 130 34.6
Peaxi162Scf00021g00112 Petunia axillaris HOM05D002113 ORTHO05D002124 3.6e-11 72.4 134 35.1
CAN.G170.16 Capsicum annuum HOM05D002113 ORTHO05D002124 4.7e-11 72.0 137 38.7
Haze_15206 Corylus avellana HOM05D002113 ORTHO05D002124 8.1e-11 71.2 133 36.1
Nitab4.5_0006421g0010 Nicotiana tabacum HOM05D002113 ORTHO05D002124 8.1e-11 71.2 132 38.6
Glyma.07G076200 Glycine max HOM05D002113 ORTHO05D002124 1.4e-10 70.5 133 36.8
Rhsim07G0019900 Rhododendron simsii HOM05D002113 ORTHO05D002124 1.8e-10 70.1 142 35.2
Nitab4.5_0006421g0020 Nicotiana tabacum HOM05D002113 ORTHO05D002124 2.4e-10 69.7 137 38.7
Solyc01g091590.3 Solanum lycopersicum HOM05D002113 ORTHO05D002124 3.1e-10 69.3 138 35.5
Nitab4.5_0005423g0030 Nicotiana tabacum HOM05D002113 ORTHO05D002124 4.0e-10 68.9 131 38.2
Gohir.D11G090400 Gossypium hirsutum HOM05D002113 ORTHO05D002124 5.2e-10 68.6 129 34.9
Gorai.007G096400 Gossypium raimondii HOM05D002113 ORTHO05D002124 5.2e-10 68.6 129 34.9
Thecc.01G366100 Theobroma cacao HOM05D002113 ORTHO05D002124 5.2e-10 68.6 132 35.6
Rhsim07G0019500 Rhododendron simsii HOM05D002113 ORTHO05D002124 6.9e-10 68.2 138 34.8
Rhsim07G0019600 Rhododendron simsii HOM05D002113 ORTHO05D002124 6.9e-10 68.2 138 34.8
Rhsim07G0019700 Rhododendron simsii HOM05D002113 ORTHO05D002124 6.9e-10 68.2 142 33.8
TWI23G0797 Tripterygium wilfordii HOM05D002113 ORTHO05D002124 6.9e-10 68.2 130 33.8
Sopen01g037360 Solanum pennellii HOM05D002113 ORTHO05D002124 1.2e-09 67.4 138 34.8
vmacro13325 Vaccinium macrocarpon HOM05D002113 ORTHO05D002124 1.2e-09 67.4 139 36.7
Duzib133G0436 Durio zibethinus HOM05D002113 ORTHO05D002124 1.5e-09 67.0 130 36.9
Gohir.A12G104600 Gossypium hirsutum HOM05D002113 ORTHO05D002124 1.5e-09 67.0 130 36.9
Peaxi162Scf00233g00082 Petunia axillaris HOM05D002113 ORTHO05D002124 1.5e-09 67.0 135 33.3
QL08p050151 Quercus lobata HOM05D002113 ORTHO05D002124 1.5e-09 67.0 128 36.7
Gorai.008G117300 Gossypium raimondii HOM05D002113 ORTHO05D002124 2.0e-09 66.6 130 36.2
Manes.01G260800 Manihot esculenta HOM05D002113 ORTHO05D002124 2.0e-09 66.6 130 33.8
vmacro13324 Vaccinium macrocarpon HOM05D002113 ORTHO05D002124 2.0e-09 66.6 139 36.7
Oeu058608.1 Olea europaea HOM05D002113 ORTHO05D002124 2.6e-09 66.2 147 36.7
Oeu059238.1 Olea europaea HOM05D002113 ORTHO05D002124 2.6e-09 66.2 135 34.8
Sabra14G0056800 Salix brachista HOM05D002113 ORTHO05D002124 2.6e-09 66.2 130 36.9
Gohir.D12G108300 Gossypium hirsutum HOM05D002113 ORTHO05D002124 3.4e-09 65.9 130 36.2
Manes.01G260700 Manihot esculenta HOM05D002113 ORTHO05D002124 4.4e-09 65.5 134 35.8
Gohir.A12G104400 Gossypium hirsutum HOM05D002113 ORTHO05D002124 5.8e-09 65.1 130 36.2
Gohir.D12G108400 Gossypium hirsutum HOM05D002113 ORTHO05D002124 5.8e-09 65.1 130 36.2
Gohir.A11G086200 Gossypium hirsutum HOM05D002113 ORTHO05D002124 7.6e-09 64.7 128 33.6
Sed0001800 Sechium edule HOM05D002113 ORTHO05D002124 7.6e-09 64.7 133 35.3
DCAR_016013 Daucus carota HOM05D002113 ORTHO05D002124 1.3e-08 63.9 146 33.6
Manes.05G038800 Manihot esculenta HOM05D002113 ORTHO05D002124 1.3e-08 63.9 127 34.6
DCAR_015601 Daucus carota HOM05D002113 ORTHO05D002124 2.2e-08 63.2 131 35.1
Sabra14G0056900 Salix brachista HOM05D002113 ORTHO05D002124 2.2e-08 63.2 139 36.0
TWI23G0711 Tripterygium wilfordii HOM05D002113 ORTHO05D002124 2.2e-08 63.2 129 32.6
Duzib138G1209 Durio zibethinus HOM05D002113 ORTHO05D002124 2.9e-08 62.8 127 33.9
Lj9C578T12 Lonicera japonica HOM05D002113 ORTHO05D002124 2.9e-08 62.8 133 32.3
Ca_23741_v3 Cicer arietinum L. HOM05D002113 ORTHO05D002124 3.8e-08 62.4 99 36.4
MD01G1049300 Malus domestica HOM05D002113 ORTHO05D002124 3.8e-08 62.4 136 36.0
COL.COLO4_12607 Corchorus olitorius HOM05D002113 ORTHO05D002124 4.9e-08 62.0 133 32.3
Glyma.03G015900 Glycine max HOM05D002113 ORTHO05D002124 4.9e-08 62.0 133 33.8
CsaV3_3G009190 Cucumis sativus L. HOM05D002113 ORTHO05D002124 6.4e-08 61.6 134 32.8
Lalb_Chr17g0339921 Lupinus albus HOM05D002113 ORTHO05D002124 6.4e-08 61.6 146 31.5
PGR031G2634 Punica granatum HOM05D002113 ORTHO05D002124 6.4e-08 61.6 132 34.8
TWI23G0844 Tripterygium wilfordii HOM05D002113 ORTHO05D002124 6.4e-08 61.6 133 33.8
Hma1.2p1_0033F.1_g020480 Hydrangea macrophylla HOM05D002113 ORTHO05D002124 8.4e-08 61.2 138 34.8
Lalb_Chr10g0097351 Lupinus albus HOM05D002113 ORTHO05D002124 8.4e-08 61.2 166 31.3
MD01G1049600 Malus domestica HOM05D002113 ORTHO05D002124 8.4e-08 61.2 133 36.1
CSS0019860 Camellia sinensis var. sinensis HOM05D002113 ORTHO05D002124 1.1e-07 60.8 148 33.8
MELO3C006139.2 Cucumis melo HOM05D002113 ORTHO05D002124 1.1e-07 60.8 135 35.6
Potri.002G155300 Populus trichocarpa HOM05D002113 ORTHO05D002124 1.1e-07 60.8 135 32.6
Prupe.2G157300 Prunus persica HOM05D002113 ORTHO05D002124 1.4e-07 60.5 138 32.6
VMungo1383G2018 Vigna mungo HOM05D002113 ORTHO05D002124 1.4e-07 60.5 128 35.2
CSS0037858 Camellia sinensis var. sinensis HOM05D002113 ORTHO05D002124 1.9e-07 60.1 145 31.7
MD07G1126500 Malus domestica HOM05D002113 ORTHO05D002124 2.4e-07 59.7 135 31.9
Prupe.2G157400 Prunus persica HOM05D002113 ORTHO05D002124 2.4e-07 59.7 139 33.8
MD07G1126600 Malus domestica HOM05D002113 ORTHO05D002124 3.2e-07 59.3 128 35.2
Sabra02G0123200 Salix brachista HOM05D002113 ORTHO05D002124 3.2e-07 59.3 131 33.6
CSS0024887 Camellia sinensis var. sinensis HOM05D002113 ORTHO05D002124 5.4e-07 58.5 145 31.0
Dinv43771 Davidia involucrata HOM05D002113 ORTHO05D002124 7.1e-07 58.2 140 33.6
Sed0019497 Sechium edule HOM05D002113 ORTHO05D002124 7.1e-07 58.2 137 32.1
arahy.Tifrunner.gnm1.ann1.T7PCV6 Arachis hypogaea HOM05D002113 ORTHO05D002124 9.3e-07 57.8 132 31.8
MD07G1126400 Malus domestica HOM05D002113 ORTHO05D002124 9.3e-07 57.8 136 33.8
PGR042G3453 Punica granatum HOM05D002113 ORTHO05D002124 9.3e-07 57.8 136 30.1
Eucgr.E00208 Eucalyptus grandis HOM05D002113 ORTHO05D002124 1.2e-06 57.4 126 34.1
Oeu033966.1 Olea europaea HOM05D002113 ORTHO05D002124 1.2e-06 57.4 132 34.1
Eucgr.L01642 Eucalyptus grandis HOM05D002113 ORTHO05D002124 1.6e-06 57.0 137 31.4
Hma1.2p1_1323F.1_g275550 Hydrangea macrophylla HOM05D002113 ORTHO05D002124 1.6e-06 57.0 136 32.4
Potri.014G078600 Populus trichocarpa HOM05D002113 ORTHO05D002124 1.6e-06 57.0 131 34.4
CAN.G587.81 Capsicum annuum HOM05D002113 ORTHO05D002124 2.1e-06 56.6 128 35.9
Glyma.07G076100 Glycine max HOM05D002113 ORTHO05D002124 2.7e-06 56.2 131 32.8
Actinidia38301 Actinidia chinensis HOM05D002113 ORTHO05D002124 3.5e-06 55.8 135 32.6
Eucgr.L01644 Eucalyptus grandis HOM05D002113 ORTHO05D002124 3.5e-06 55.8 157 30.6
vmacro13326 Vaccinium macrocarpon HOM05D002113 ORTHO05D002124 3.5e-06 55.8 136 33.1
Actinidia32932 Actinidia chinensis HOM05D002113 ORTHO05D002124 4.6e-06 55.5 135 33.3
Eucgr.E00204 Eucalyptus grandis HOM05D002113 ORTHO05D002124 4.6e-06 55.5 137 31.4
Migut.B01706 Erythranthe guttata HOM05D002113 ORTHO05D002124 6.0e-06 55.1 144 30.6
Eucgr.E00206 Eucalyptus grandis HOM05D002113 ORTHO05D002124 6.0e-06 55.1 137 32.1
Hma1.2p1_1323F.1_g275560 Hydrangea macrophylla HOM05D002113 ORTHO05D002124 6.0e-06 55.1 136 32.4
HanXRQChr13g0426221 Helianthus annuus HOM05D002113 ORTHO05D002124 7.8e-06 54.7 129 30.2
Phvul.010G093500 Phaseolus vulgaris HOM05D002113 ORTHO05D002124 7.8e-06 54.7 125 28.0


User provided reference genes

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