Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 2.5e-133 478.8 244 100.0
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 2.4e-112 409.1 244 84.4
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.8e-107 392.9 243 82.7
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 1.6e-95 353.2 248 76.2
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 2.1e-95 352.8 245 76.7
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 8.2e-92 340.9 245 75.5
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 2.2e-81 306.2 241 67.6
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 7.4e-77 291.2 242 66.1
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 8.2e-76 287.7 242 65.3
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 2.4e-75 286.2 231 64.9
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 3.8e-73 278.9 246 63.0
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 1.4e-72 276.9 233 63.1
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 1.9e-72 276.6 245 60.8
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 2.5e-72 276.2 246 63.0
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 1.6e-71 273.5 251 64.1
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 1.6e-71 273.5 239 62.8
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 2.1e-71 273.1 246 58.9
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 2.7e-71 272.7 239 61.9
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 3.6e-71 272.3 246 61.8
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 3.6e-71 272.3 239 64.0
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 3.6e-71 272.3 235 63.4
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 6.1e-71 271.6 252 63.5
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 6.1e-71 271.6 236 61.9
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 1.0e-70 270.8 246 61.8
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.8e-70 270.0 248 58.9
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 8.8e-70 267.7 250 59.6
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 1.1e-69 267.3 248 58.5
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.1e-69 267.3 235 63.0
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.5e-69 266.9 248 58.5
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 3.3e-69 265.8 234 62.4
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 4.4e-69 265.4 247 60.3
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 4.4e-69 265.4 244 59.0
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 4.1e-67 258.8 230 60.9
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 7.0e-67 258.1 245 58.0
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 7.0e-67 258.1 245 58.0
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 7.0e-67 258.1 232 62.1
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.0e-67 258.1 248 57.7
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 1.2e-66 257.3 249 58.6
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.5e-66 256.9 230 61.7
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 2.0e-66 256.5 242 57.9
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 2.6e-66 256.1 234 59.8
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 2.6e-66 256.1 236 58.9
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.7e-65 253.4 248 56.9
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 2.9e-65 252.7 238 58.8
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 3.8e-65 252.3 188 70.2
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 5.0e-65 251.9 229 58.1
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 6.5e-65 251.5 250 54.8
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 8.5e-65 251.1 248 56.0
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 8.5e-65 251.1 228 60.5
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 3.2e-64 249.2 252 55.2
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 4.2e-64 248.8 237 56.5
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 9.4e-64 247.7 235 58.3
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 1.6e-63 246.9 255 54.5
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 2.1e-63 246.5 182 68.1
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 2.1e-63 246.5 249 54.2
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 2.1e-63 246.5 247 55.5
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 4.7e-63 245.4 254 55.5
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 4.7e-63 245.4 220 59.1
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 8.0e-63 244.6 241 58.9
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 8.0e-63 244.6 239 56.1
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 1.4e-62 243.8 241 58.9
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 1.8e-62 243.4 227 58.1
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 3.0e-62 242.7 235 55.7
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 3.9e-62 242.3 235 55.7
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 6.7e-62 241.5 250 52.8
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 6.7e-62 241.5 253 54.5
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 6.7e-62 241.5 252 56.0
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 8.8e-62 241.1 254 53.9
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 8.8e-62 241.1 188 67.0
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 1.5e-61 240.4 254 52.8
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 5.7e-61 238.4 196 63.8
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 5.7e-61 238.4 226 57.5
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 7.4e-61 238.0 253 53.0
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 9.7e-61 237.7 241 55.2
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 9.7e-61 237.7 233 57.1
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 1.3e-60 237.3 247 54.3
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 1.1e-59 234.2 228 56.6
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 2.0e-58 229.9 243 53.1
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 1.0e-57 227.6 223 55.6
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 1.3e-57 227.3 218 57.8
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 7.2e-56 221.5 192 61.5
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 2.1e-55 219.9 232 55.6
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 4.7e-55 218.8 247 50.2
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 8.0e-55 218.0 221 51.6
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 1.0e-54 217.6 133 78.2
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 3.0e-54 216.1 198 55.6
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 1.5e-53 213.8 224 54.9
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 1.3e-52 210.7 198 55.1
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 4.8e-52 208.8 247 48.2
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 8.2e-52 208.0 232 50.9
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.4e-51 207.2 244 50.8
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 1.3e-49 200.7 190 54.7
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 3.2e-48 196.1 234 50.9
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 3.4e-45 186.0 234 47.0
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 6.3e-44 181.8 204 50.0
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 2.4e-43 179.9 191 49.7
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 5.4e-43 178.7 131 74.8
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 1.0e-41 174.5 231 46.8
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 8.0e-39 164.9 193 50.8
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 6.8e-38 161.8 229 41.5
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 1.3e-33 147.5 142 55.6
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 1.2e-31 141.0 142 56.3
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 1.7e-28 130.6 142 52.1
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 2.4e-27 126.7 136 54.4
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 5.4e-27 125.6 147 50.3
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 7.0e-27 125.2 146 50.0
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 9.2e-27 124.8 130 56.2
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 1.3e-25 120.9 159 49.1
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 3.0e-25 119.8 144 49.3
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 3.9e-25 119.4 147 48.3
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 6.6e-25 118.6 234 37.2
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 1.9e-24 117.1 151 48.3
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 1.2e-21 107.8 155 42.6
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 2.0e-21 107.1 155 41.9
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 2.0e-21 107.1 155 41.9
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 5.8e-21 105.5 137 50.4
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 5.8e-21 105.5 203 36.9
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 5.8e-21 105.5 203 36.9
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 3.7e-20 102.8 133 46.6
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.2e-18 97.8 141 41.8
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 2.7e-18 96.7 138 43.5
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 3.6e-15 86.3 151 39.1
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 9.2e-11 71.6 64 56.2
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 1.6e-07 60.8 124 37.1
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 8.1e-07 58.5 43 69.8


User provided reference genes

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