Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 0.0e+00 1318.1 645 100.0
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 0.0e+00 1139.4 648 86.9
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 0.0e+00 1133.6 648 86.3
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 0.0e+00 1130.5 633 89.1
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 0.0e+00 1130.2 650 85.7
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 0.0e+00 1105.5 649 85.4
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 8.8e-295 1016.5 587 84.7
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 4.4e-286 987.6 644 75.3
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 1.4e-284 982.6 650 75.2
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 2.9e-282 974.9 648 73.3
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 6.6e-282 973.8 648 73.9
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 6.6e-282 973.8 644 74.5
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 1.5e-281 972.6 636 75.0
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 3.3e-281 971.5 649 73.7
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 9.5e-281 969.9 648 73.8
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 7.5e-278 960.3 675 71.0
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 1.3e-277 959.5 648 73.3
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 7.0e-276 953.7 651 73.3
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 4.6e-275 951.0 686 69.5
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 8.6e-274 946.8 648 73.1
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 8.0e-272 940.3 641 72.5
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.0e-270 935.6 668 70.4
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 9.8e-270 933.3 660 70.2
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.7e-269 932.6 668 70.2
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 4.6e-267 924.5 653 71.8
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 1.7e-266 922.5 654 70.5
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 5.0e-266 921.0 653 71.4
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 1.9e-265 919.1 608 74.8
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.2e-264 916.4 649 72.3
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 6.2e-264 914.1 655 68.4
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 5.4e-260 901.0 645 68.4
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 5.4e-260 901.0 649 68.1
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 2.7e-259 898.7 653 69.2
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 3.5e-259 898.3 644 68.0
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 1.3e-258 896.3 644 70.8
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 8.6e-258 893.6 644 70.7
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 1.1e-257 893.3 652 67.9
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 1.9e-257 892.5 644 68.6
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 2.5e-257 892.1 643 70.3
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 7.3e-257 890.6 652 68.7
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 3.1e-255 885.2 648 67.6
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 6.8e-255 884.0 639 68.1
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 6.8e-255 884.0 647 67.9
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 1.2e-254 883.2 644 68.6
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 1.2e-254 883.2 648 68.8
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 5.8e-254 880.9 643 67.3
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 1.3e-253 879.8 651 68.0
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 4.9e-253 877.9 639 68.7
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 6.4e-253 877.5 650 67.8
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 8.4e-253 877.1 663 67.0
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 1.4e-252 876.3 651 66.8
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 3.2e-252 875.2 649 69.6
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 4.1e-252 874.8 647 65.8
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 2.1e-251 872.5 655 67.5
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 6.0e-251 870.9 639 67.1
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 3.0e-250 868.6 652 66.3
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 5.1e-250 867.8 653 64.6
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 9.6e-249 863.6 646 66.3
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.2e-248 863.2 643 66.9
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 1.2e-248 863.2 647 65.4
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 6.2e-248 860.9 643 65.3
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.1e-247 860.1 647 68.3
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 1.1e-247 860.1 646 65.9
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 2.4e-247 859.0 653 64.3
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 3.1e-247 858.6 672 64.7
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 2.0e-246 855.9 638 66.1
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 2.6e-246 855.5 644 66.8
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 7.6e-246 854.0 664 64.8
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 1.7e-245 852.8 638 67.4
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 8.4e-245 850.5 641 66.6
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 8.4e-245 850.5 649 66.4
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 1.4e-244 849.7 636 67.0
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 1.9e-244 849.4 641 64.0
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 3.2e-244 848.6 632 66.0
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 3.2e-244 848.6 645 64.0
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 7.8e-243 844.0 643 65.2
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 3.3e-241 838.6 668 63.3
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 2.1e-240 835.9 642 64.6
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 8.1e-240 833.9 644 64.3
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 2.6e-238 828.9 659 62.8
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 2.6e-238 828.9 659 62.8
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 1.7e-237 826.2 646 62.4
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 6.0e-235 817.8 685 61.3
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 6.0e-227 791.2 643 61.6
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 1.6e-224 783.1 641 61.3
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 2.6e-222 775.8 649 64.1
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 8.4e-221 770.8 637 58.9
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 4.2e-212 741.9 458 77.9
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 3.7e-208 728.8 498 71.3
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 4.1e-207 725.3 622 62.4
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 1.8e-199 699.9 553 64.0
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 5.9e-198 694.9 598 59.0
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 7.7e-198 694.5 363 92.3
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 4.0e-186 655.6 618 53.7
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 6.5e-181 638.3 631 52.3
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 1.2e-169 600.9 501 59.7
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 5.2e-162 575.5 433 65.4
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 2.3e-157 560.1 337 79.8
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 4.6e-150 535.8 336 75.3
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 1.1e-135 488.0 463 52.9
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 1.4e-114 417.9 428 53.3
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 1.3e-83 315.1 195 79.0
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 1.8e-82 311.2 267 59.2
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 3.1e-74 283.9 182 68.7
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 2.9e-72 277.3 179 79.3
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 1.8e-61 241.5 206 60.2
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 1.5e-60 238.4 157 75.2
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 9.8e-52 209.1 190 54.7
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 7.0e-50 203.0 126 75.4
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 2.9e-48 197.6 173 60.1
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 6.8e-37 159.8 171 51.5
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 7.3e-31 139.8 73 84.9
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 3.6e-30 137.5 103 67.0
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 1.3e-27 129.0 116 56.9
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 9.5e-23 112.8 64 79.7
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 6.2e-22 110.2 81 64.2


User provided reference genes

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