Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 1.9e-50 202.2 103 100.0
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 2.0e-47 192.2 103 94.2
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 8.6e-43 176.8 99 88.9
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 3.3e-42 174.9 103 85.4
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 7.3e-42 173.7 103 84.5
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 2.1e-41 172.2 103 83.5
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 4.7e-41 171.0 103 83.5
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 6.2e-41 170.6 103 83.5
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.1e-40 169.9 103 82.5
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 1.8e-40 169.1 100 84.0
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 1.8e-40 169.1 100 84.0
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 3.1e-40 168.3 103 81.6
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 4.0e-40 167.9 102 79.4
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 5.2e-40 167.5 103 81.6
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 6.8e-40 167.2 102 81.4
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 6.8e-40 167.2 102 81.4
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 8.9e-40 166.8 102 78.4
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 2.0e-39 165.6 103 78.6
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 3.4e-39 164.9 103 78.6
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 5.8e-39 164.1 101 82.2
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 5.8e-39 164.1 103 79.6
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 7.5e-39 163.7 103 75.7
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 9.8e-39 163.3 100 79.0
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 9.8e-39 163.3 103 77.7
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 1.3e-38 162.9 103 77.7
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 1.3e-38 162.9 103 79.6
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 1.7e-38 162.5 102 78.4
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 2.9e-38 161.8 103 76.7
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 2.9e-38 161.8 102 76.5
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 3.7e-38 161.4 103 77.7
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 3.7e-38 161.4 102 78.4
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 3.7e-38 161.4 103 75.7
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 4.9e-38 161.0 103 76.7
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 4.9e-38 161.0 103 76.7
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 6.4e-38 160.6 103 77.7
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 6.4e-38 160.6 102 75.5
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 8.3e-38 160.2 103 73.8
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 8.3e-38 160.2 103 74.8
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 8.3e-38 160.2 103 74.8
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 8.3e-38 160.2 103 74.8
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 8.3e-38 160.2 103 74.8
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 8.3e-38 160.2 102 76.5
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 8.3e-38 160.2 103 75.7
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 8.3e-38 160.2 103 75.7
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 8.3e-38 160.2 103 74.8
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 8.3e-38 160.2 103 77.7
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 1.1e-37 159.8 102 74.5
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 1.1e-37 159.8 103 77.7
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 1.4e-37 159.5 103 78.6
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 1.9e-37 159.1 103 74.8
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 1.9e-37 159.1 103 74.8
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 1.9e-37 159.1 103 75.7
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 1.9e-37 159.1 103 76.7
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 2.4e-37 158.7 102 74.5
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 2.4e-37 158.7 102 76.5
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 3.2e-37 158.3 103 72.8
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 5.4e-37 157.5 103 77.7
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 7.0e-37 157.1 103 72.8
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 7.0e-37 157.1 102 71.6
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 7.0e-37 157.1 103 76.7
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 7.0e-37 157.1 103 76.7
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 9.2e-37 156.8 103 75.7
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 9.2e-37 156.8 103 76.7
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 9.2e-37 156.8 103 73.8
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 1.2e-36 156.4 99 78.8
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 1.2e-36 156.4 103 72.8
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.2e-36 156.4 102 74.5
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 1.2e-36 156.4 103 74.8
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 1.6e-36 156.0 102 73.5
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.6e-36 156.0 100 76.0
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 1.6e-36 156.0 99 75.8
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.6e-36 156.0 103 75.7
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 1.6e-36 156.0 103 75.7
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 1.6e-36 156.0 97 78.4
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 1.6e-36 156.0 99 74.7
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 2.1e-36 155.6 103 72.8
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 2.1e-36 155.6 103 74.8
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 2.7e-36 155.2 103 72.8
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 2.7e-36 155.2 103 72.8
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 2.7e-36 155.2 103 74.8
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 3.5e-36 154.8 102 73.5
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 3.5e-36 154.8 103 73.8
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 3.5e-36 154.8 103 74.8
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 4.6e-36 154.5 94 79.8
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 73.8
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 1.0e-35 153.3 100 76.0
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.3e-35 152.9 103 73.8
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 2.3e-35 152.1 100 73.0
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 3.9e-35 151.4 101 70.3
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 6.6e-35 150.6 101 71.3
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 6.6e-35 150.6 101 71.3
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 6.6e-35 150.6 101 71.3
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 1.1e-34 149.8 99 73.7
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 1.5e-34 149.4 94 78.7
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 1.5e-34 149.4 99 73.7
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 1.5e-34 149.4 101 69.3
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.9e-34 149.1 101 71.3
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 3.3e-34 148.3 99 69.7
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 3.3e-34 148.3 103 70.9
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 5.6e-34 147.5 99 70.7
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 9.5e-34 146.7 103 72.8
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 1.2e-33 146.4 103 68.0
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 1.6e-33 146.0 98 71.4
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 1.6e-33 146.0 98 73.5
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 3.6e-33 144.8 99 71.7
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 8.1e-33 143.7 99 69.7
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.1e-32 143.3 102 67.6
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 1.1e-32 143.3 100 70.0
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.4e-32 142.9 99 71.7
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.8e-32 142.5 98 71.4
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 1.8e-32 142.5 98 71.4
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 3.1e-32 141.7 100 71.0
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 3.1e-32 141.7 102 68.6
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 6.8e-32 140.6 99 68.7
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 1.5e-31 139.4 96 69.8
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 4.4e-31 137.9 95 74.7
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 7.5e-31 137.1 95 74.7
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 9.9e-31 136.7 103 67.0
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 2.2e-30 135.6 95 73.7
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 2.2e-30 135.6 100 67.0
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 4.9e-30 134.4 95 73.7
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 4.9e-30 134.4 95 73.7
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 1.9e-26 122.5 69 81.2
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 2.1e-25 119.0 73 72.6
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 4.7e-25 117.9 73 74.0
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 6.2e-25 117.5 73 74.0
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.4e-24 115.5 105 61.9
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 3.1e-24 115.2 104 62.5
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 5.2e-24 114.4 72 72.2
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 1.5e-23 112.8 74 70.3
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 2.2e-22 109.0 160 41.9
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 2.9e-22 108.6 77 63.6
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 5.4e-21 104.4 88 59.1
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 1.7e-19 99.4 62 79.0
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 2.3e-19 99.0 69 65.2
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 6.6e-19 97.4 103 53.4
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 9.6e-18 93.6 69 58.0
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 1.8e-16 89.4 88 53.4
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 4.0e-16 88.2 85 54.1
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.2e-14 82.4 85 45.9
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 2.1e-12 75.9 83 47.0
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 3.5e-12 75.1 98 46.9
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 6.6e-11 70.9 55 58.2
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 5.6e-10 67.8 74 52.7
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 1.6e-09 66.2 61 50.8
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 4.0e-08 61.6 84 44.0
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 4.9e-06 54.7 93 35.5


User provided reference genes

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