Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 7.0e-209 730.3 357 100.0
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 5.7e-195 684.1 359 94.4
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 2.1e-181 639.0 359 86.6
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 3.7e-178 628.2 359 86.6
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 8.6e-167 590.5 358 81.0
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 9.6e-166 587.0 358 81.0
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 9.6e-166 587.0 358 80.7
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 4.0e-164 581.6 358 79.6
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 5.8e-163 577.8 358 78.2
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 2.2e-162 575.9 358 77.7
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 6.4e-162 574.3 359 76.3
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 1.1e-161 573.5 358 78.5
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 2.5e-158 562.4 358 77.1
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.3e-151 540.0 359 70.2
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 3.9e-151 538.5 359 69.9
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.5e-150 536.6 355 70.1
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.5e-150 536.6 354 72.3
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 1.9e-150 536.2 356 72.2
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 1.9e-150 536.2 357 72.3
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 4.3e-150 535.0 357 71.4
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.3e-150 535.0 356 71.9
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 5.6e-150 534.6 354 72.0
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.1e-149 532.7 352 71.3
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 2.8e-149 532.3 352 70.7
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 6.2e-149 531.2 356 70.5
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.8e-148 529.6 352 70.7
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 1.2e-147 526.9 357 69.5
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 2.2e-146 522.7 352 70.2
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 3.8e-146 521.9 355 71.0
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.9e-145 519.6 356 68.5
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 2.4e-145 519.2 352 69.0
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 2.4e-145 519.2 356 69.7
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 1.2e-144 516.9 355 69.9
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.1e-144 516.2 357 68.3
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 2.7e-144 515.8 355 70.4
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 2.7e-144 515.8 355 70.4
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 2.7e-144 515.8 359 67.4
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 4.6e-144 515.0 358 67.3
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.0e-143 513.8 358 67.3
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 3.0e-143 512.3 369 68.6
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 8.7e-143 510.8 356 69.1
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 8.7e-143 510.8 356 67.4
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 1.5e-142 510.0 358 70.4
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 3.3e-142 508.8 356 69.7
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 3.3e-142 508.8 355 69.3
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.3e-141 506.9 354 69.2
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 1.6e-141 506.5 358 67.9
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 2.1e-141 506.1 355 69.0
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 3.7e-141 505.4 358 67.9
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 3.7e-141 505.4 358 67.9
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 1.4e-140 503.4 355 68.5
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 1.4e-140 503.4 356 68.8
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 2.6e-139 499.2 355 67.6
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 3.4e-139 498.8 355 67.6
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 4.5e-139 498.4 356 65.4
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 1.0e-138 497.3 356 66.6
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 1.0e-138 497.3 355 68.2
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.0e-138 497.3 362 64.6
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 1.7e-138 496.5 339 69.3
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 3.8e-138 495.4 368 65.5
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 6.5e-138 494.6 361 66.5
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.1e-137 493.8 355 66.8
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 1.9e-137 493.0 356 66.3
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 3.2e-137 492.3 358 67.0
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 4.2e-137 491.9 354 66.1
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 3.5e-136 488.8 360 65.6
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 4.6e-136 488.4 371 66.0
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 6.0e-136 488.0 353 66.0
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 1.0e-135 487.3 371 66.0
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 1.8e-135 486.5 356 66.6
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 2.3e-135 486.1 356 66.3
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 1.5e-134 483.4 340 67.9
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 5.7e-134 481.5 340 66.8
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 3.7e-133 478.8 351 67.0
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 2.4e-132 476.1 355 64.8
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.2e-131 473.8 357 64.7
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 3.4e-131 472.2 354 65.0
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 5.9e-131 471.5 357 63.6
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 7.6e-131 471.1 358 65.6
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 1.7e-130 469.9 355 64.2
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 2.9e-130 469.2 357 63.3
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.9e-129 466.5 355 63.1
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 9.3e-129 464.2 360 60.0
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.7e-128 462.6 382 60.7
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.7e-128 462.6 382 60.7
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 3.6e-128 462.2 337 66.8
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 2.3e-127 459.5 321 68.2
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 1.9e-126 456.4 355 63.7
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 1.3e-125 453.8 355 62.8
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 8.2e-125 451.1 355 62.3
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 1.8e-124 449.9 356 64.0
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 4.1e-124 448.7 355 61.7
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 5.3e-124 448.4 355 62.8
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 1.5e-123 446.8 355 61.7
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 1.5e-123 446.8 392 57.1
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 3.4e-123 445.7 355 61.4
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 3.4e-123 445.7 355 61.1
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 3.4e-123 445.7 358 64.0
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 1.3e-122 443.7 355 60.6
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 2.2e-122 443.0 356 61.5
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 2.9e-122 442.6 355 61.7
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 3.8e-122 442.2 355 61.1
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 1.9e-121 439.9 357 60.8
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 1.9e-121 439.9 355 60.6
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.9e-121 439.9 355 60.6
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 1.9e-121 439.9 355 60.6
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 2.5e-121 439.5 357 58.5
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 3.0e-119 432.6 355 59.4
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 5.1e-119 431.8 382 57.3
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.7e-117 426.8 389 56.3
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 8.2e-117 424.5 326 61.7
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.1e-116 424.1 355 60.6
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 3.4e-115 419.1 359 56.8
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 6.5e-114 414.8 355 58.3
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 1.1e-113 414.1 291 68.0
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.9e-113 413.3 284 68.3
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 7.9e-112 407.9 357 54.1
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 1.1e-110 404.1 288 66.7
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 9.7e-110 401.0 359 54.3
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.4e-108 397.1 344 58.7
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 1.0e-106 391.0 361 50.7
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.3e-102 375.9 367 52.6
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 4.1e-100 369.0 247 69.6
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 2.0e-99 366.7 322 56.2
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 2.4e-92 343.2 291 59.1
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 2.2e-90 336.7 356 50.6
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 6.5e-90 335.1 293 54.3
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 8.0e-88 328.2 360 45.8
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.8e-87 325.1 291 56.0
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 1.8e-84 317.0 379 45.4
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 5.0e-82 308.9 359 46.5
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 9.8e-78 294.7 337 49.3
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 3.2e-76 289.7 294 49.7
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 1.6e-67 260.8 180 63.9
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 7.8e-67 258.5 344 42.7
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 4.3e-57 226.1 357 42.3
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 4.3e-57 226.1 357 42.3
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.6e-57 225.7 228 53.5
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 7.3e-57 225.3 324 41.7
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 5.2e-55 219.2 300 42.0
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 2.0e-54 217.2 147 74.1
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 5.6e-49 199.1 121 75.2
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 3.4e-46 189.9 354 36.2
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.4e-46 189.5 227 46.7
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 1.7e-45 187.6 366 36.9
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.6e-33 146.0 121 57.0
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 5.6e-25 119.4 75 82.7
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.3e-24 118.2 104 54.8
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 3.1e-23 113.6 371 27.2
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 2.3e-18 97.4 375 24.0
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 8.7e-18 95.5 122 44.3
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.8e-16 90.5 53 77.4
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 4.8e-16 89.7 71 60.6
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 1.8e-15 87.8 274 25.9
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 7.6e-14 82.4 86 48.8
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 7.6e-14 82.4 86 48.8
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 3.9e-10 70.1 41 78.0
arahy.Tifrunner.gnm1.ann1.FTJQ4M Arachis hypogaea HOM05D004497 ORTHO05D005539 7.4e-09 65.9 54 61.1
Glyma.02G139950 Glycine max HOM05D002163 ORTHO05D002386 4.5e-06 56.6 29 86.2


User provided reference genes

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